DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and AT5G52820

DIOPT Version :10

Sequence 1:NP_524984.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_200094.1 Gene:AT5G52820 / 835359 AraportID:AT5G52820 Length:473 Species:Arabidopsis thaliana


Alignment Length:384 Identity:99/384 - (25%)
Similarity:160/384 - (41%) Gaps:89/384 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 VKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 122
            ::|......|:|||.:||..|.|||:|:.|||.|.|..:::|..|......|..|||..:..|||
plant    95 IRPVNRCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAW 159

  Fly   123 SSDSRLLVSGSDDKTLKVWELSTGK-SLKTLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVR 181
            |.|.:.|||||....:..|....|: ....|.||..::...::.|     .....|:.|.|...|
plant   160 SPDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDAR 224

  Fly   182 IWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL---------- 236
            |||:...|.:..|..|:..|:.|.:..|| :|.:.|.|...::|:|..|:.::.|          
plant   225 IWDITLKKSIICLSGHTLAVTCVKWGGDG-IIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSL 288

  Fly   237 -----------------------------------IDDDNPP----------------------- 243
                                               ...|:|.                       
plant   289 ALSTEYVLRTGAFDHTGRQYPPNEEKQKALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPK 353

  Fly   244 ---------VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 299
                     |:.|.|||:||:|.:|:.|.:::||:...|:.:..:.||....|.:  ::| ...:
plant   354 KRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRGHVGPVYQV--SWS-ADSR 415

  Fly   300 WIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWK 358
            .::|||:|:.:.||.:::|::.|.|.||.|.|......|....:.|..  .|:.:||||
plant   416 LLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGG--KDRVLKLWK 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_524984.1 WD40 <63..361 CDD:441893 98/379 (26%)
WD40 repeat 75..112 CDD:293791 14/36 (39%)
WD40 repeat 118..154 CDD:293791 13/36 (36%)
WD40 repeat 159..195 CDD:293791 9/40 (23%)
WD40 repeat 202..237 CDD:293791 10/79 (13%)
WD40 repeat 244..280 CDD:293791 13/35 (37%)
WD40 repeat 288..325 CDD:293791 9/36 (25%)
WD40 repeat 331..357 CDD:293791 5/25 (20%)
AT5G52820NP_200094.1 NLE 12..72 CDD:462380
WD40 100..471 CDD:441893 95/376 (25%)
WD40 repeat 113..149 CDD:293791 13/35 (37%)
WD40 repeat 154..192 CDD:293791 13/37 (35%)
WD40 repeat 198..239 CDD:293791 10/40 (25%)
WD40 repeat 244..279 CDD:293791 10/35 (29%)
WD40 repeat 286..357 CDD:293791 2/70 (3%)
WD40 repeat 363..399 CDD:293791 13/35 (37%)
WD40 repeat 405..441 CDD:293791 10/38 (26%)
WD40 repeat 447..471 CDD:293791 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.

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