DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and Cfap52

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_082239.2 Gene:Cfap52 / 71860 MGIID:1919110 Length:620 Species:Mus musculus


Alignment Length:258 Identity:62/258 - (24%)
Similarity:118/258 - (45%) Gaps:19/258 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSR 127
            |:.|:...|  ...:.|..:|:.:.|:..|..|:.:....|:...|| |.|::|::.:|.:||.:
Mouse   368 LRITVPNMT--CHGIDFMRDGKSIISAWDDGKIRAFAPESGRLMYTINSAHRIGVTAIATTSDCK 430

  Fly   128 LLVSGSDDKTLKVWEL--STGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VRT 187
            .::||..:..::||::  .|.|..:.||.|.:.|.|......:...|:.|.|.:..|||   :|.
Mouse   431 RIISGGGEGEVRVWQVGCQTQKLEEALKEHKSSVSCIRVKKNNEECVTASTDGTCIIWDLVRLRR 495

  Fly   188 GKCL--KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 250
            .:.:  .||      ...|.::.:...|::|..|.....|:...|..::.|....:..::.:..:
Mouse   496 NQMILANTL------FQCVCYHPEEFQIITSGTDRKIAYWEVFDGSVIRELEGSLSGSINGMDIT 554

  Fly   251 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 313
            ..|.:.:....|:.:|:|||::|:......||...   |.|.....|.::|||.|.|..:..|
Mouse   555 QEGGHFVTGGHDHLVKVWDYNEGEVTHVGVGHSGN---IMAMRISPGNQYIVSVSADGAILRW 614

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 62/258 (24%)
WD40 repeat 75..112 CDD:293791 8/37 (22%)
WD40 repeat 118..154 CDD:293791 10/37 (27%)
WD40 repeat 159..195 CDD:293791 10/40 (25%)
WD40 repeat 202..237 CDD:293791 6/34 (18%)
WD40 repeat 244..280 CDD:293791 7/35 (20%)
WD40 repeat 288..325 CDD:293791 9/26 (35%)
WD40 repeat 331..357 CDD:293791
Cfap52NP_082239.2 WD40 10..399 CDD:225201 7/32 (22%)
WD40 30..399 CDD:295369 7/32 (22%)
WD 1 62..106
WD40 repeat 68..109 CDD:293791
WD 2 109..150
WD40 repeat 114..159 CDD:293791
WD 3 156..195
WD40 repeat 162..240 CDD:293791
WD40 repeat 257..302 CDD:293791
WD40 277..617 CDD:225201 62/258 (24%)
WD 4 288..327