DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and Poc1a

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_081630.2 Gene:Poc1a / 70235 MGIID:1917485 Length:405 Species:Mus musculus


Alignment Length:303 Identity:102/303 - (33%)
Similarity:158/303 - (52%) Gaps:21/303 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 APSGPN-SLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTL------------KFTLAGHTKAVS 76
            |||..: ||:.:..|...|.|..:.|.:.|...|...:.||            :||  ||..||:
Mouse     3 APSQEDPSLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFT--GHKDAVT 65

  Fly    77 AVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDKTLKV 140
            .|.|||:|..|||.|.||.::|| ..:.|.|.|: ..|...:..|.:.||.:.||:.|||||:||
Mouse    66 CVNFSPSGHLLASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCSDGQSLVTASDDKTVKV 129

  Fly   141 WELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVH 205
            |.....:.|.:|..|.|:|.|..|:|...||||.|.|::|::||..:.:|:.:...|...|:.|.
Mouse   130 WSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVD 194

  Fly   206 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 270
            |:..|:.|.::..|...::||..:.:.|:. ....:..|:.:.|.|:|.|::.|:.|:|||:.|.
Mouse   195 FHPSGTCIAAAGMDNTVKVWDARTHRLLQH-YQLHSAAVNALSFHPSGNYLITASSDSTLKILDL 258

  Fly   271 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 313
            .:|:.|.|..||:.....:  .||.| |::..||..|..|.:|
Mouse   259 MEGRLLYTLHGHQGPATTV--AFSRT-GEYFASGGSDEQVMVW 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 90/263 (34%)
WD40 repeat 75..112 CDD:293791 17/37 (46%)
WD40 repeat 118..154 CDD:293791 15/35 (43%)
WD40 repeat 159..195 CDD:293791 14/35 (40%)
WD40 repeat 202..237 CDD:293791 8/34 (24%)
WD40 repeat 244..280 CDD:293791 14/35 (40%)
WD40 repeat 288..325 CDD:293791 9/26 (35%)
WD40 repeat 331..357 CDD:293791
Poc1aNP_081630.2 WD40 11..299 CDD:238121 98/295 (33%)
WD40 <13..301 CDD:225201 97/293 (33%)
WD 1 17..56 8/38 (21%)
WD40 repeat 23..59 CDD:293791 8/37 (22%)
WD 2 59..98 19/39 (49%)
WD40 repeat 64..100 CDD:293791 17/36 (47%)
WD 3 101..140 15/38 (39%)
WD40 repeat 107..142 CDD:293791 14/34 (41%)
WD 4 143..182 16/38 (42%)
WD40 repeat 148..184 CDD:293791 14/35 (40%)
WD 5 185..224 10/38 (26%)
WD40 repeat 190..226 CDD:293791 9/36 (25%)
WD 6 227..266 13/38 (34%)
WD40 repeat 232..255 CDD:293791 9/22 (41%)
WD 7 269..308 11/33 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 313..352
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53955
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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