DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and ambra1b

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_001289149.1 Gene:ambra1b / 559106 ZFINID:ZDB-GENE-050208-235 Length:1360 Species:Danio rerio


Alignment Length:167 Identity:51/167 - (30%)
Similarity:78/167 - (46%) Gaps:16/167 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 ISGHKLGISDVAWSSDSRLLVSGSDDKT--LKVWELSTGKSLKT-LKGHSNYVFCCNFNPQSNLI 171
            :||.:.|   .......|||....:|:|  :| |:     |.|. |..:....|...|:|..||:
Zfish    12 LSGRERG---ARMLGSQRLLQQLVEDRTRWMK-WQ-----SQKVELPDNPRSTFLLAFSPDRNLV 67

  Fly   172 VSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQCLKT 235
            .|...:.::.|.||:|||||.:|..|......|.|:.. ..|:.|...||..||||...|.  ::
Zfish    68 ASTHVNHNIYITDVKTGKCLHSLVGHRRTPWCVTFHPTIPGLVASGCLDGEVRIWDLHGGS--ES 130

  Fly   236 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 272
            ...:.|..::.:.|.|..:.:|.|| :|.|..||:|:
Zfish   131 WFTESNVAIASLAFHPTAQLLLIAT-NNELHFWDWSR 166

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 51/167 (31%)
WD40 repeat 75..112 CDD:293791 0/1 (0%)
WD40 repeat 118..154 CDD:293791 10/38 (26%)
WD40 repeat 159..195 CDD:293791 14/35 (40%)
WD40 repeat 202..237 CDD:293791 11/35 (31%)
WD40 repeat 244..280 CDD:293791 10/29 (34%)
WD40 repeat 288..325 CDD:293791
WD40 repeat 331..357 CDD:293791
ambra1bNP_001289149.1 WD40 <43..>197 CDD:225201 41/127 (32%)
WD40 <58..197 CDD:295369 37/112 (33%)
WD40 repeat 58..91 CDD:293791 13/32 (41%)
WD40 repeat 98..134 CDD:293791 11/37 (30%)
WD40 repeat 139..175 CDD:293791 10/29 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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