DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wds and nle1

DIOPT Version :10

Sequence 1:NP_524984.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_001315445.1 Gene:nle1 / 553606 ZFINID:ZDB-GENE-050522-321 Length:476 Species:Danio rerio


Alignment Length:430 Identity:111/430 - (25%)
Similarity:172/430 - (40%) Gaps:120/430 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 QQPLPTAPSGPNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTLKFTLAGHTKAVSAVKFSPN 83
            :|.||..      .||.:|.:..|.....||                  |.|||:||.:|.|||.
Zfish    76 EQVLPVV------YQPQAVFRVRAVARCTSS------------------LEGHTEAVISVAFSPT 116

  Fly    84 GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKS 148
            |::|||.|.|..::.|.........|..||...:..:|||.|.:.|.||..:..:.:|:..|||.
Zfish   117 GKYLASGSGDTTVRFWDLSTETPHHTSRGHTHWVLSIAWSPDGKKLASGCKNSQIFLWDPVTGKQ 181

  Fly   149 L-KTLKGHSNYV-FCC----NFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFN 207
            : |||.||:.:: :.|    :.||:...:.|.|.|.::||||...|...|.|..|:..|:.|.:.
Zfish   182 IGKTLTGHTKWITWLCWEPLHLNPECRYLASTSKDCTIRIWDTVLGHYDKILTGHTHSVTCVKWG 246

  Fly   208 RDGSLIVSSSYDGLCRIWDTASG-QC---------LKTLI------------------------- 237
            .|| |:.:||.|...::|....| ||         :.||.                         
Zfish   247 GDG-LLYTSSQDRTIKVWRAKDGVQCRTLQGHAHWVNTLALSTDYVLRTGAFEPANATINPQDLT 310

  Fly   238 -----------------------------DD----------DNPP----------VSFVKFSPNG 253
                                         ||          |..|          |:.|.|||:.
Zfish   311 GSLEEIKEKALKRYNSVRGEGHERLVSGSDDFTMFLWNPAEDKKPVARLTGHQALVNEVLFSPDT 375

  Fly   254 KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSK 318
            :.|.:|:.|.::|:||...||.|.:..||....|.:..:   ...:.:||||.|:.:.:|::::.
Zfish   376 RLIASASFDKSIKIWDGKTGKYLNSLRGHVGPVYQVAWS---ADSRLLVSGSSDSTLKVWDIKTG 437

  Fly   319 EVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWK 358
            ::...|.||.|.|......|....:||..  .||.:::|:
Zfish   438 KLNADLPGHADEVFAVDWSPDGQRVASGG--KDKCLRIWR 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_524984.1 WD40 <63..361 CDD:441893 102/386 (26%)
WD40 repeat 75..112 CDD:293791 13/36 (36%)
WD40 repeat 118..154 CDD:293791 14/36 (39%)
WD40 repeat 159..195 CDD:293791 12/40 (30%)
WD40 repeat 202..237 CDD:293791 12/44 (27%)
WD40 repeat 244..280 CDD:293791 14/35 (40%)
WD40 repeat 288..325 CDD:293791 6/36 (17%)
WD40 repeat 331..357 CDD:293791 6/25 (24%)
nle1NP_001315445.1 NLE 8..68 CDD:462380
WD40 77..475 CDD:441893 110/427 (26%)
WD40 repeat 110..145 CDD:293791 12/34 (35%)
WD40 repeat 150..188 CDD:293791 14/37 (38%)
WD40 repeat 194..235 CDD:293791 13/40 (33%)
WD40 repeat 240..275 CDD:293791 12/35 (34%)
WD40 repeat 282..360 CDD:293791 6/77 (8%)
WD40 repeat 366..402 CDD:293791 14/35 (40%)
WD40 repeat 408..444 CDD:293791 7/38 (18%)
WD40 repeat 450..474 CDD:293791 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.