DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and Poc1a

DIOPT Version :10

Sequence 1:NP_524984.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_001102766.2 Gene:Poc1a / 501048 RGDID:1565004 Length:405 Species:Rattus norvegicus


Alignment Length:311 Identity:102/311 - (32%)
Similarity:159/311 - (51%) Gaps:29/311 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 HPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTL------------KFTL 68
            |..:.|         ||:.:..|...|.|..:.|.:.|...|...:.||            :|| 
  Rat     4 HSQEDP---------SLERHFKGHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFT- 58

  Fly    69 AGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSRLLVSG 132
             ||..||:.|.|||:|..|||.|.||.::|| ..:.|.|.|: ..|...:..|.:.||.:|||:.
  Rat    59 -GHKDAVTCVNFSPSGHLLASGSRDKTVRIW-VPNVKGESTVFRAHTATVRSVHFCSDGQLLVTA 121

  Fly   133 SDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAH 197
            |||||:|||.....:.|.:|..|.|:|.|..|:|...||||.|.|::|::||..:.:|:.:...|
  Rat   122 SDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVHSYCEH 186

  Fly   198 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 262
            ...|:.|.|:..|:.|.::..|...::|||.:.:.::. ....:..|:.:.|.|:|.|::.|:.|
  Rat   187 GGFVTYVDFHPSGTCIAAAGMDNTVKVWDTRTHRLVQH-YQLHSAAVNALSFHPSGNYLITASSD 250

  Fly   263 NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 313
            :|||:.|..:|:.|.|..||:.....:  .||.| |::..||..|..|.:|
  Rat   251 STLKILDLMEGRLLYTLHGHQGPATTV--AFSRT-GEYFASGGSDEQVMVW 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_524984.1 WD40 <63..361 CDD:441893 92/264 (35%)
WD40 repeat 75..112 CDD:293791 17/37 (46%)
WD40 repeat 118..154 CDD:293791 16/35 (46%)
WD40 repeat 159..195 CDD:293791 14/35 (40%)
WD40 repeat 202..237 CDD:293791 8/34 (24%)
WD40 repeat 244..280 CDD:293791 14/35 (40%)
WD40 repeat 288..325 CDD:293791 9/26 (35%)
WD40 repeat 331..357 CDD:293791
Poc1aNP_001102766.2 WD40 <7..298 CDD:441893 100/306 (33%)
WD40 repeat 23..59 CDD:293791 8/37 (22%)
WD40 repeat 64..100 CDD:293791 17/36 (47%)
WD40 repeat 107..142 CDD:293791 15/34 (44%)
WD40 repeat 148..184 CDD:293791 14/35 (40%)
WD40 repeat 190..226 CDD:293791 9/36 (25%)
WD40 repeat 232..255 CDD:293791 9/22 (41%)
Blue background indicates that the domain is not in the aligned region.

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