DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and poc1b

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_012814294.1 Gene:poc1b / 448445 XenbaseID:XB-GENE-944930 Length:470 Species:Xenopus tropicalis


Alignment Length:329 Identity:99/329 - (30%)
Similarity:158/329 - (48%) Gaps:25/329 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SLQPNSVGQPGATTSSNSSASNKSSLS-----------VKPNYTLKFTLAGHTKAVSAVKFSPNG 84
            :||.:..|...|.|..:.|...|...|           .||. :..:...||.:||:.|:|||:|
 Frog     9 ALQRHFKGHKDAVTYVDFSPDGKQLASSSADACVMIWNFKPQ-SRAYKYPGHKEAVTCVQFSPSG 72

  Fly    85 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSL 149
            ..:||||.|:.:::|..........:..|...:..|.:|||....::.||||::|.|.|...:.|
 Frog    73 HLVASSSKDRTVRLWAPNIKGESSVLKAHTAVVRCVNFSSDGHTFITASDDKSIKAWNLHRQRFL 137

  Fly   150 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIV 214
            .:|..|:|:|.|..|:|...||.|.|.|::|||||:....|:.|...:....:.|.||..|:.:.
 Frog   138 YSLTEHTNWVRCARFSPDGRLIASCSDDKTVRIWDITNRLCINTFVDYKGHSNYVDFNPMGTCVA 202

  Fly   215 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 279
            |:..|...::||..:.:.|:. ....|..|:.:.|.|:|.|:|.|:.|.|:|:.|..:|:.:.|.
 Frog   203 SAGVDSTVKVWDIRTNKLLQH-YQVHNAGVNSLSFHPSGNYLLTASNDGTVKILDLLEGRLIYTL 266

  Fly   280 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW-----NLQSKEVVQKLQGHTDTVLCTACHPT 339
            .||:..  .:...||.:|.:: .||:.|..|.:|     ....||:|:..|..|    |....|.
 Frog   267 HGHQGP--VLSVAFSKSGDQF-ASGATDAQVLVWKTNFDKYNIKEIVKLQQKRT----CPEAPPH 324

  Fly   340 ENII 343
            .|.|
 Frog   325 LNDI 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 89/285 (31%)
WD40 repeat 75..112 CDD:293791 12/36 (33%)
WD40 repeat 118..154 CDD:293791 13/35 (37%)
WD40 repeat 159..195 CDD:293791 16/35 (46%)
WD40 repeat 202..237 CDD:293791 9/34 (26%)
WD40 repeat 244..280 CDD:293791 13/35 (37%)
WD40 repeat 288..325 CDD:293791 11/41 (27%)
WD40 repeat 331..357 CDD:293791 4/13 (31%)
poc1bXP_012814294.1 WD40 12..298 CDD:238121 87/290 (30%)
WD40 repeat 21..58 CDD:293791 6/37 (16%)
WD40 repeat 64..100 CDD:293791 11/35 (31%)
WD40 repeat 105..141 CDD:293791 12/35 (34%)
WD40 repeat 148..183 CDD:293791 15/34 (44%)
WD40 repeat 190..225 CDD:293791 9/35 (26%)
WD40 repeat 231..267 CDD:293791 13/35 (37%)
WD40 repeat 273..297 CDD:293791 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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