DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and poc1a

DIOPT Version :10

Sequence 1:NP_524984.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_073771774.1 Gene:poc1a / 406322 ZFINID:ZDB-GENE-040426-1993 Length:440 Species:Danio rerio


Alignment Length:335 Identity:106/335 - (31%)
Similarity:171/335 - (51%) Gaps:35/335 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SLQPNSVGQPGATTSSNSSASNKSSLS-----------VKP-NYTLKFTLAGHTKAVSAVKFSPN 83
            :|:.|..|...|.||.:.|.|.|...|           :|| :...:||  ||..||:.|:|||:
Zfish     9 TLERNFKGHRDAITSLDFSPSGKQIASGSVDACVMVWNMKPQSRAYRFT--GHKDAVTCVQFSPS 71

  Fly    84 GEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGK 147
            ...|||||.||.:::| ....|.|..: ..|...:..|.:|:|.:.|::.|||:::|:|.:...|
Zfish    72 AHLLASSSRDKTVRLW-VPSVKGESVLFRAHTGSVRSVCFSADGQSLLTASDDQSIKLWSVHRQK 135

  Fly   148 SLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSL 212
            .:.||:.|:|:|.|..|:|...|:||.|.|.:|::||..:.:.:.|........|.|.|:...:.
Zfish   136 IICTLREHNNWVRCARFSPDGQLMVSVSDDRTVKLWDASSRQLIHTFCEPGGYSSYVDFHPSSTC 200

  Fly   213 IVSSSYDGLCRIWDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 274
            |.::|.|...|:||..:    .||:..   .:..|:.:.|.|:|.::|.|:.|:|||:.|..:|:
Zfish   201 IATASSDNTVRVWDIRT----HTLLQHYQVHSAAVNALSFHPSGNHLLTASSDSTLKILDLLEGR 261

  Fly   275 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW--NLQSKEVVQKLQGHTDTVLCTACH 337
            .|.|..||:....|:  :||.:|.::..:|| |..|.:|  |..|.:..:.||...|       |
Zfish   262 LLYTLHGHQGSASCV--SFSRSGDQFASAGS-DQQVMVWRTNFDSVDYSRVLQQKRD-------H 316

  Fly   338 PTENIIASAA 347
            .|.:..||.|
Zfish   317 RTPSAQASGA 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_524984.1 WD40 <63..361 CDD:441893 94/291 (32%)
WD40 repeat 75..112 CDD:293791 15/37 (41%)
WD40 repeat 118..154 CDD:293791 12/35 (34%)
WD40 repeat 159..195 CDD:293791 13/35 (37%)
WD40 repeat 202..237 CDD:293791 10/34 (29%)
WD40 repeat 244..280 CDD:293791 14/35 (40%)
WD40 repeat 288..325 CDD:293791 11/38 (29%)
WD40 repeat 331..357 CDD:293791 5/17 (29%)
poc1aXP_073771774.1 None

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