DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wds and poc1b

DIOPT Version :10

Sequence 1:NP_524984.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_956412.1 Gene:poc1b / 386932 ZFINID:ZDB-GENE-031118-54 Length:490 Species:Danio rerio


Alignment Length:325 Identity:98/325 - (30%)
Similarity:153/325 - (47%) Gaps:26/325 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GHPGVVHPPQQPLPTAPSGPNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTLKFTLAGHTKA 74
            ||..|:       ..|...||:.|        ..|.|...:....:|:.|..   .|...|||..
Zfish    16 GHKDVI-------SCADFNPNNKQ--------LATGSCDKSLMIWNLAPKAR---AFRFVGHTDV 62

  Fly    75 VSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSRLLVSGSDDKTL 138
            ::.|.|:|:|..:||||.|:.:::| ....|.|.|: ..|...:..|.:|.|.:.||:.||||::
Zfish    63 ITGVNFAPSGSLVASSSRDQTVRLW-TPSIKGESTVFKAHTASVRSVNFSRDGQRLVTASDDKSV 126

  Fly   139 KVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSA 203
            |||.:...|.|.:|..|:|:|.|..|:|...||.|...|.:||:||..:.:|......:....:.
Zfish   127 KVWGVERKKFLYSLNRHTNWVRCARFSPDGRLIASCGDDRTVRLWDTSSHQCTNIFTDYGGSATF 191

  Fly   204 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 268
            |.||..|:.|.||..|...:|||..:.:.::. ....|..|:...|.|:|.|:::.:.|:|:|:.
Zfish   192 VDFNSSGTCIASSGADNTIKIWDIRTNKLIQH-YKVHNAGVNCFSFHPSGNYLISGSSDSTIKIL 255

  Fly   269 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW--NLQSKEVVQKLQGHTDTV 331
            |..:|:.:.|..|||..  .:...|| ..|....||..|:.|.:|  |..|....:.|..|:..|
Zfish   256 DLLEGRLIYTLHGHKGP--VLTVTFS-RDGDLFASGGADSQVLMWKTNFDSLNYRELLSRHSKRV 317

  Fly   332  331
            Zfish   318  317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_524984.1 WD40 <63..361 CDD:441893 87/272 (32%)
WD40 repeat 75..112 CDD:293791 13/37 (35%)
WD40 repeat 118..154 CDD:293791 15/35 (43%)
WD40 repeat 159..195 CDD:293791 13/35 (37%)
WD40 repeat 202..237 CDD:293791 11/34 (32%)
WD40 repeat 244..280 CDD:293791 11/35 (31%)
WD40 repeat 288..325 CDD:293791 10/38 (26%)
WD40 repeat 331..357 CDD:293791 1/1 (100%)
poc1bNP_956412.1 WD40 <6..300 CDD:441893 93/306 (30%)
WD 1. /evidence=ECO:0000255 16..55 11/56 (20%)
WD40 repeat 22..58 CDD:293791 9/46 (20%)
WD 2. /evidence=ECO:0000255 58..97 15/39 (38%)
WD40 repeat 63..99 CDD:293791 13/36 (36%)
WD 3. /evidence=ECO:0000255 100..139 15/38 (39%)
WD40 repeat 106..141 CDD:293791 14/34 (41%)
WD 4. /evidence=ECO:0000255 142..181 15/38 (39%)
WD40 repeat 147..181 CDD:293791 13/33 (39%)
WD 5. /evidence=ECO:0000255 184..223 11/38 (29%)
WD40 repeat 189..225 CDD:293791 11/36 (31%)
WD 6. /evidence=ECO:0000255 226..265 11/38 (29%)
WD40 repeat 231..254 CDD:293791 7/22 (32%)
WD 7. /evidence=ECO:0000255 268..307 13/41 (32%)
WD40 repeat 273..314 CDD:293791 11/41 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 375..427
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.