DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wds and Wdr13

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_006256781.2 Gene:Wdr13 / 317370 RGDID:1560982 Length:485 Species:Rattus norvegicus


Alignment Length:370 Identity:92/370 - (24%)
Similarity:165/370 - (44%) Gaps:57/370 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PNSLQPNSVGQPGATTSSNSSASNKSSLSVKPNYTLKFTLAG-------HT-KAVSAVKFSPNGE 85
            |.|:.|.||.:.....:.::|.|.        ||    ..||       |. :||..|:|:.:..
  Rat   133 PGSVVPTSVAEASRAMAGDTSLSE--------NY----AFAGMYHVFDQHVDEAVPRVRFANDDR 185

  Fly    86 W-LASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGK 147
            . ||..|.|..|.:......  .....:.||..|:||.|||..:.:|||.|.|.|:::|....|:
  Rat   186 HRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGR 250

  Fly   148 SLKTLKGHSN-YVFCCNFNP-QSNLIVSGSFDESVRIWDVRTGKCLKTLPAH-SDPVSAVHFNRD 209
            .::.:..... .:.||.|.| .:||.|.|:...:|.:.::.|||.:|...:. :..|.|:.|:..
  Rat   251 CIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAP 315

  Fly   210 GSLIVSSSYDG--LCRIWDTASGQCLKT--LIDDDNPPVSFVKF---------SPN-------GK 254
            |.|:.:....|  ...::|.|:|:..|.  |:..:..||:.:..         .|:       .|
  Rat   316 GRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNK 380

  Fly   255 YILAATLDN--TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ- 316
            .:|...:||  .|:|   .:...::..:......:|...:|  ..|..:|:||||..|:.:::: 
  Rat   381 LLLYRVVDNEGALQL---KRSFPIEQSSHPVRSIFCPLMSF--RQGACVVTGSEDMCVHFFDVER 440

  Fly   317 -SKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWKSD 360
             :|..|.|||||:..||..:.:..|:::||:  :....:.:|:.:
  Rat   441 AAKAAVNKLQGHSAPVLDVSFNCDESLLASS--DASGMVIVWRRE 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 82/331 (25%)
WD40 repeat 75..112 CDD:293791 8/39 (21%)
WD40 repeat 118..154 CDD:293791 13/35 (37%)
WD40 repeat 159..195 CDD:293791 13/36 (36%)
WD40 repeat 202..237 CDD:293791 9/38 (24%)
WD40 repeat 244..280 CDD:293791 8/53 (15%)
WD40 repeat 288..325 CDD:293791 12/38 (32%)
WD40 repeat 331..357 CDD:293791 5/25 (20%)
Wdr13XP_006256781.2 WD40 <165..485 CDD:225201 81/326 (25%)
WD40 repeat 221..257 CDD:293791 13/35 (37%)
WD40 repeat 263..300 CDD:293791 13/36 (36%)
WD40 repeat 308..347 CDD:293791 9/38 (24%)
WD40 repeat 354..400 CDD:293791 8/48 (17%)
WD40 repeat 408..450 CDD:293791 12/43 (28%)
WD40 repeat 456..480 CDD:293791 5/25 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.