DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and Cfap52

DIOPT Version :10

Sequence 1:NP_524984.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_001094438.2 Gene:Cfap52 / 303233 RGDID:1308151 Length:620 Species:Rattus norvegicus


Alignment Length:258 Identity:62/258 - (24%)
Similarity:118/258 - (45%) Gaps:19/258 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 LKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDSR 127
            |:.|:...|  ...:.|..:|:.:.|:..|..|:.:....|:...|| |.|::|::.:|.:||.:
  Rat   368 LRITVPNMT--CHGIDFMRDGKSIISAWDDGKIRAFAPESGRLMYTINSAHRIGVTAIATTSDCK 430

  Fly   128 LLVSGSDDKTLKVWEL--STGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD---VRT 187
            .::||..:..::||::  .|.|..:.||.|.:.|.|......:...|:.|.|.:..|||   :|.
  Rat   431 RIISGGGEGEVRVWQIGCQTQKLEEALKEHKSSVSCIRVKKNNEECVTASTDGTCIIWDLVRLRR 495

  Fly   188 GKCL--KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 250
            .:.:  .||      ...|.::.:...|::|..|.....|:...|..::.|....:..|:.:..:
  Rat   496 NQMILANTL------FQCVCYHPEEFQIITSGTDRKIAYWEVFDGSVIRELEGSLSGSVNGMDIT 554

  Fly   251 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 313
            ..|::.:....|:.:|:|||::|:......||...   |.......|.::|||.|.|..:..|
  Rat   555 QEGEHFVTGGHDHLIKVWDYNEGEVTHVGVGHSGN---IMGIRISPGNQYIVSVSADGAILRW 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_524984.1 WD40 <63..361 CDD:441893 62/258 (24%)
WD40 repeat 75..112 CDD:293791 8/37 (22%)
WD40 repeat 118..154 CDD:293791 10/37 (27%)
WD40 repeat 159..195 CDD:293791 10/40 (25%)
WD40 repeat 202..237 CDD:293791 6/34 (18%)
WD40 repeat 244..280 CDD:293791 8/35 (23%)
WD40 repeat 288..325 CDD:293791 8/26 (31%)
WD40 repeat 331..357 CDD:293791
Cfap52NP_001094438.2 WD40 46..446 CDD:441893 21/79 (27%)
WD40 repeat 67..108 CDD:293791
WD40 repeat 115..157 CDD:293791
WD40 repeat 162..199 CDD:293791
WD40 repeat 205..302 CDD:293791
WD40 repeat 253..307 CDD:293791
WD40 287..614 CDD:441893 61/256 (24%)
WD40 repeat 380..414 CDD:293791 8/33 (24%)
WD40 repeat 421..459 CDD:293791 10/37 (27%)
WD40 repeat 464..492 CDD:293791 8/27 (30%)
WD40 repeat 500..541 CDD:293791 8/46 (17%)
WD40 repeat 548..584 CDD:293791 8/35 (23%)
WD40 repeat 590..616 CDD:293791 8/25 (32%)
Blue background indicates that the domain is not in the aligned region.

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