DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and Nup37

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_001100245.1 Gene:Nup37 / 299706 RGDID:1307774 Length:326 Species:Rattus norvegicus


Alignment Length:328 Identity:67/328 - (20%)
Similarity:124/328 - (37%) Gaps:63/328 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 VSAVKFSPNGEWLASSSADKLIKIWGA----------------YDGKFEKTIS--GHKLGISDVA 121
            |..|:|:|    ..|..:..||...|:                .:|...||:.  .|.:.:..:|
  Rat    19 VHVVEFNP----FESGESGNLIAYGGSNYVVVGMCMFQEEGTDTEGIQYKTLRTFHHGVRVDGIA 79

  Fly   122 WSSDSRL---------LVSGSDDK-TLKVWELSTGKSLKTLKGHSNYVFCCNFNP-QSNLIVSGS 175
            ||.:::|         ..|.:|.| .|...:|......|.|:|||:::....|:| :...|.|.|
  Rat    80 WSPETKLDSLPPVIKFCTSAADMKIRLFTSDLQDKNEYKVLEGHSDFINDLVFHPREGQEIASVS 144

  Fly   176 FDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 240
            .|.:.|||.:. ||.......||..:|......:...::.:..:|..|.:|..:.|.:.:|..:.
  Rat   145 DDHTCRIWSLE-GKQTAHFLLHSPGMSVCWHPEETFKLMVAEKNGTIRFYDLMAQQAILSLQSEQ 208

  Fly   241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC-LKTYTGHKNEKYCIFANFSVTGGKWIVSG 304
            .|.:| ..:.....:.:.|...|...:||.::... .:|...|.:..:..         :|  |.
  Rat   209 TPLMS-AHWCLKNTFKVGAVAGNDWIIWDITRSSYPQETRPVHMDRAHSF---------RW--SA 261

  Fly   305 SEDNMV----YIWNLQSKEVVQKLQGHTDTVLC--------TACHPTENIIASAALENDKTIKLW 357
            ..:|:.    |...:.|:..:..| ||:..:|.        .:.|.|   :...|:..|..:..|
  Rat   262 ISENLFATTGYPGKMSSQFQIHHL-GHSQPILIGSVPVGSGLSWHRT---LPLCAVGGDHKLLFW 322

  Fly   358 KSD 360
            .::
  Rat   323 VTE 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 66/324 (20%)
WD40 repeat 75..112 CDD:293791 11/54 (20%)
WD40 repeat 118..154 CDD:293791 11/45 (24%)
WD40 repeat 159..195 CDD:293791 11/36 (31%)
WD40 repeat 202..237 CDD:293791 5/34 (15%)
WD40 repeat 244..280 CDD:293791 6/36 (17%)
WD40 repeat 288..325 CDD:293791 5/40 (13%)
WD40 repeat 331..357 CDD:293791 5/33 (15%)
Nup37NP_001100245.1 WD40 repeat 22..70 CDD:293791 10/51 (20%)
WD40 <64..260 CDD:421866 45/208 (22%)
WD40 repeat 76..122 CDD:293791 11/45 (24%)
WD40 repeat 127..163 CDD:293791 11/36 (31%)
WD40 repeat 170..205 CDD:293791 5/34 (15%)
WD40 repeat 211..248 CDD:293791 6/37 (16%)
WD40 repeat 291..322 CDD:293791 5/33 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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