DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and Wsb2

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_008767442.1 Gene:Wsb2 / 288692 RGDID:1359599 Length:406 Species:Rattus norvegicus


Alignment Length:313 Identity:87/313 - (27%)
Similarity:146/313 - (46%) Gaps:54/313 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 GQPGATTSSNSSASNKSSLSVKPNYTLKFTL-AGHTKAVSAVKFSPNGEW--------------- 86
            |....:.||.:.:..:.||..|       || .|  :.|..:.|||   |               
  Rat    67 GFEAKSRSSKNDSKGRGSLKEK-------TLDCG--QIVWGLAFSP---WPSPPSRKLWLRHHPQ 119

  Fly    87 --------LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS-SDSRLLVSGSDDKTLKVWE 142
                    ||:...|..||||....|.....:|||:..:.|:::: :.|.:|||.|.||||::|:
  Rat   120 VPDVSCLILATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSFTPNGSLILVSASRDKTLRIWD 184

  Fly   143 LST-GKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHF 206
            |:. ||.::.|.||..:|:||:.:|..:::.|.:.::||.:|.:|:...::.|..|...|.:..|
  Rat   185 LNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDF 249

  Fly   207 NRDGSLIVSSSYDGLCRIWDTASGQCLKTL--------IDDDNPPVSFVK---FSPNGKYILAAT 260
            :.|.:|:|::|||....:||..:|:.|::|        :||.:..:|.::   |||.|.|:....
  Rat   250 SPDSALLVTASYDTSVIMWDPYTGERLRSLHHTQLEAPVDDSDVHMSSLRSVCFSPEGLYLATVA 314

  Fly   261 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIW 313
            .|..|::|.... |....:....|...|.|    ...|..|.:|:.|..|..|
  Rat   315 DDRLLRIWALEL-KAPVAFAPMTNGLCCTF----FPHGGVIATGTRDGHVQFW 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 81/287 (28%)
WD40 repeat 75..112 CDD:293791 13/59 (22%)
WD40 repeat 118..154 CDD:293791 15/37 (41%)
WD40 repeat 159..195 CDD:293791 9/35 (26%)
WD40 repeat 202..237 CDD:293791 12/42 (29%)
WD40 repeat 244..280 CDD:293791 10/38 (26%)
WD40 repeat 288..325 CDD:293791 8/26 (31%)
WD40 repeat 331..357 CDD:293791
Wsb2XP_008767442.1 WD40 repeat 31..91 CDD:293791 7/30 (23%)
WD40 32..369 CDD:225201 87/313 (28%)
WD40 123..362 CDD:238121 72/243 (30%)
WD40 repeat 159..197 CDD:293791 15/37 (41%)
WD40 repeat 202..238 CDD:293791 9/35 (26%)
WD40 repeat 246..291 CDD:293791 13/44 (30%)
WD40 repeat 298..330 CDD:293791 9/32 (28%)
WD40 repeat 338..374 CDD:293791 8/29 (28%)
SOCS_WSB_SWIP 366..404 CDD:239702
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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