DRSC/TRiP Functional Genomics Resources

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Protein Alignment wds and wdsub1

DIOPT Version :9

Sequence 1:NP_001245503.1 Gene:wds / 53428 FlyBaseID:FBgn0040066 Length:361 Species:Drosophila melanogaster
Sequence 2:XP_002933313.1 Gene:wdsub1 / 100487088 XenbaseID:XB-GENE-964629 Length:485 Species:Xenopus tropicalis


Alignment Length:313 Identity:84/313 - (26%)
Similarity:147/313 - (46%) Gaps:35/313 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 LAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGK---FEKTISGHKLGISDVAWSSDSRLL 129
            |.||:..|::..||.:  ::||.|.||.::::...|.|   | ..:.||..|:....::.|..:|
 Frog     8 LKGHSDDVNSCSFSDS--YVASCSLDKTLRVYSLKDFKELPF-SPLKGHTYGVHWCCFAPDKPIL 69

  Fly   130 VSGSDDKTLKVWELSTGKSLKTLKGHS-NYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKT 193
            .|.|.|....:|.:..|:.|..|:..| :.|..|.::..||.:.:|..|.|:.:|:|:..|..::
 Frog    70 ASCSTDGKTILWNMHNGQMLAVLEQPSGSPVRVCRYSSNSNYLATGGADGSIVLWNVQQMKFHRS 134

  Fly   194 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKY- 255
            .......:.|..|:..|:|:::.|..|....||    :.||.|.:|....  |:...||....| 
 Frog   135 ATVKDGSIVACAFSPHGNLLITGSSCGDLTAWD----ENLKCLYNDKGHDLGVTCCDFSSQTVYE 195

  Fly   256 -------ILAATLDNTLKLWDYS----KG---KCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 305
                   :.:...||.:::|..|    :|   :|..|..||..... |.|:    :.|:.:||||
 Frog   196 RGIEYYQMASCGQDNEIRVWLISFSDARGFGMRCKLTLGGHSAPVLSCAFS----SDGQILVSGS 256

  Fly   306 EDNMVYIWNLQSKEVVQKLQGHTDTVLCTACHPTENIIASAALENDKTIKLWK 358
            .|..|.|:.:::..::..|..||..|...|..|...::|:.::  |||:.:||
 Frog   257 VDKSVIIYTVKTGCILTILTHHTRYVTACALAPKHPLLATGSM--DKTVTIWK 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wdsNP_001245503.1 WD40 64..358 CDD:238121 82/311 (26%)
WD40 repeat 75..112 CDD:293791 11/39 (28%)
WD40 repeat 118..154 CDD:293791 9/35 (26%)
WD40 repeat 159..195 CDD:293791 10/35 (29%)
WD40 repeat 202..237 CDD:293791 10/34 (29%)
WD40 repeat 244..280 CDD:293791 11/50 (22%)
WD40 repeat 288..325 CDD:293791 10/36 (28%)
WD40 repeat 331..357 CDD:293791 7/25 (28%)
wdsub1XP_002933313.1 WD40 5..307 CDD:238121 82/311 (26%)
WD40 repeat 16..52 CDD:293791 10/38 (26%)
WD40 repeat 57..93 CDD:293791 8/35 (23%)
WD40 repeat 101..136 CDD:293791 9/34 (26%)
WD40 repeat 143..177 CDD:293791 11/37 (30%)
WD40 repeat 183..234 CDD:293791 11/50 (22%)
WD40 repeat 240..264 CDD:293791 9/27 (33%)
WD40 repeat 282..306 CDD:293791 7/25 (28%)
SAM_superfamily 327..397 CDD:387673
RING_Ubox 402..473 CDD:388418
U-box domain, a modified RING finger 408..443 CDD:319569
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D957291at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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