DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Alk and SRF5

DIOPT Version :9

Sequence 1:NP_001261027.1 Gene:Alk / 53425 FlyBaseID:FBgn0040505 Length:1701 Species:Drosophila melanogaster
Sequence 2:NP_178019.2 Gene:SRF5 / 844238 AraportID:AT1G78980 Length:699 Species:Arabidopsis thaliana


Alignment Length:931 Identity:183/931 - (19%)
Similarity:290/931 - (31%) Gaps:303/931 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   620 INLSVVEMKEKENITTTLWWS-TKNQGSDWMRAEYVLPNITSKYYLQFEARMGMRIYSDVAVDDF 683
            :.|.:|.:.    ||.||..: |.||....:...:...|..||.       .|.:.......:|.
plant     6 VRLVIVSLA----ITVTLLQAKTDNQEVSALNVMFTSLNSPSKL-------KGWKANGGDPCEDS 59

  Fly   684 SLSPECFGLNIPEDHLGGYNYWDVR----QNLKSPTYKDFEYTNYLELTTCDTRGMIGPSQAQCE 744
            ....:|.|.::.|..|.|:.....|    .||||.|..|....|        .:|.| |.|....
plant    60 WEGVKCKGSSVTELQLSGFELGGSRGYLLSNLKSLTTFDLSKNN--------LKGNI-PYQLPPN 115

  Fly   745 AAYREQNKTHVLREVHVVEDQSSYKGMQKWKVPHEGHYTIIAKGASGGLGSGGVGSSRGSVAVAI 809
            .|..:.::..:  :.:|....|..|.:|...:                    |.....|.:....
plant   116 IANLDFSENEL--DGNVPYSLSQMKNLQSINL--------------------GQNKLNGELPDMF 158

  Fly   810 LELHKNEELYFLVGQQGENACIKSMGVLKEAGCGTDHDLDLAQYSFRSKQDMVKNIYIENGAGGG 874
            .:|.|.|.|.|.:.        |..|.|.:              ||.:...: |.:::::....|
plant   159 QKLSKLETLDFSLN--------KLSGKLPQ--------------SFANLTSL-KKLHLQDNRFTG 200

  Fly   875 GGGSYVFLLNQAKNEAVPLLVAGGGGGLGIGQYIDEDFQHGQKAKPLQAPESGQINGEPLNKKTA 939
            .       :|..:|.|:..|           ...|..|:                          
plant   201 D-------INVLRNLAIDDL-----------NVEDNQFE-------------------------- 221

  Fly   940 GPGGGWRAKEDQALSPTYGAALLQGGRGGHSCYVELADNGTSVHRHGQGGFGGGGGGCNTGGGGG 1004
                ||...|.:.:.     :||.||....:........|....|...|...|||....||    
plant   222 ----GWIPNELKDID-----SLLTGGNDWSTETAPPPPPGVKYGRKSSGSKDGGGITAGTG---- 273

  Fly  1005 GYAGGDVYLTESNGEGGSSYISPSRSLREISEIHAGASSGPGAIIIIPAIEGCGCDYRCVALDEF 1069
                                           .:.|||..|...:||:           .:||  .
plant   274 -------------------------------MVIAGACLGVLVLIIV-----------LIAL--V 294

  Fly  1070 RSKVRCICPDGWSLKRDNHT-----------ACEIREEAG---------------------KSSF 1102
            ..|...:.|........:||           |.|:|.:.|                     |...
plant   295 SKKKSSLSPHFIDEDNSHHTPKFKSLTSHGSAQELRVDFGNDYKDGKSGDSGDENIHRIGSKGLK 359

  Fly  1103 QYLVSILMISLAVLFICIAALIFMLYNRYQRKKQSKKRHKMLVE-QDLQLTRLRNNIDDSNLNNF 1166
            .|:.|.:|......|.          |:...|:.:..|..:..| .|||          |...||
plant   360 HYVSSRVMSFTDTEFA----------NKLNAKRTTSTRSAVEFELSDLQ----------SATANF 404

  Fly  1167 NPNYGCDGILNGHIDVNSLPQVARDSLQLVNALGKGAFGEVYMALYRHRDGDAVEMGVAVKTLRE 1231
            :|.                           |.||:|:.|.||.|.|  .||..:.:.....||.:
plant   405 SPG---------------------------NLLGEGSIGRVYRAKY--SDGRTLAVKKIDSTLFD 440

  Fly  1232 DPKREKEEDFLKEAAIMAKFNHPNMVHLIGVCFDRQPYYIVLELLAGGDLQKFLRENRNTPERPS 1296
            ..|.|.....:..   ::|..|.|:..|:|.|.::....:|.|....|.|.:||..: :...:| 
plant   441 SGKSEGITPIVMS---LSKIRHQNIAELVGYCSEQGHNMLVYEYFRNGSLHEFLHLS-DCFSKP- 500

  Fly  1297 LLTMKDLLFCALDVAKGCRYME---SKRFIHRDIAARNCLLSSK-GPGRVVKIADFGMSRDIYRS 1357
             ||....:..||..|:...|:.   |...:|::|.:.|.||.:. .|    :::|:|:|:...|:
plant   501 -LTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNP----RLSDYGLSKFYLRT 560

  Fly  1358 DYYRKGGKAMLPIKWMPPEAFLDGIFTSKTDVWSFGILLWEVFSLGRSPYPGQHNTQVMELVVRG 1422
            ......|       :..|||.....:|.|:||:|||:::.|:.: ||.|:.|:.......||   
plant   561 SQNLGEG-------YNAPEARDPSAYTPKSDVYSFGVVMLELLT-GRVPFDGEKPRPERSLV--- 614

  Fly  1423 GRLGSPTECPVSIYKVMAD---------------------CWNPTPEDRPTFITLLEHLTACTQD 1466
             |..:|....:.....:||                     |....||.||....::|.|....|.
plant   615 -RWATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEALVRMVQR 678

  Fly  1467 ASIMNAPLPNILGPTASERDD 1487
            :|:   .|.:.|..:....||
plant   679 SSM---KLKDDLSSSYRAHDD 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlkNP_001261027.1 MAM 288..450 CDD:279023
MAM 288..447 CDD:99706
MAM 505..691 CDD:279023 15/71 (21%)
MAM 505..689 CDD:99706 14/69 (20%)
PTKc_ALK_LTK 1186..1462 CDD:270632 74/300 (25%)
TyrKc 1193..1460 CDD:197581 73/291 (25%)
SRF5NP_178019.2 LRRNT_2 25..65 CDD:369783 7/46 (15%)
leucine-rich repeat 70..93 CDD:275380 6/22 (27%)
PLN00113 <73..680 CDD:215061 161/832 (19%)
leucine-rich repeat 94..115 CDD:275380 7/29 (24%)
leucine-rich repeat 116..139 CDD:275380 3/24 (13%)
leucine-rich repeat 140..163 CDD:275380 4/42 (10%)
leucine-rich repeat 164..187 CDD:275380 8/44 (18%)
leucine-rich repeat 188..209 CDD:275380 4/28 (14%)
leucine-rich repeat 210..230 CDD:275380 6/60 (10%)
PKc_like 410..675 CDD:389743 73/288 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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