DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Alk and Epha3

DIOPT Version :10

Sequence 1:NP_652600.1 Gene:Alk / 53425 FlyBaseID:FBgn0040505 Length:1701 Species:Drosophila melanogaster
Sequence 2:NP_113752.2 Gene:Epha3 / 29210 RGDID:68389 Length:984 Species:Rattus norvegicus


Alignment Length:413 Identity:131/413 - (31%)
Similarity:196/413 - (47%) Gaps:90/413 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1078 PDGWSLKRDN-HTACEIREEAGKSSFQYLVSILMISLAVLFICIAALIFMLYNR---YQRKKQSK 1138
            ||.:|:..:| |                 |.::.||.||..|.:..:.::|..|   |.:.|.|.
  Rat   530 PDSFSISGENSH-----------------VVMIAISAAVAIIVLTVVTYVLVGRFCGYHKSKHSS 577

  Fly  1139 KRHKMLVEQDLQLTRLRNNIDDSNLNNFNPNYGCDGILNGHIDVNSL-----PQVARDSLQLVN- 1197
                                |:..|     ::|     |||:.:..|     |....|..|.|: 
  Rat   578 --------------------DEKRL-----HFG-----NGHLRLPGLRTYVDPHTYEDPTQAVHE 612

  Fly  1198 --------------ALGKGAFGEVYMALYRHRDGDAVEMGVAVKTLREDPKREKEEDFLKEAAIM 1248
                          .:|.|.||||...  |.:.....|:.||:|||:.....::..|||.||:||
  Rat   613 FAKELDATNIAIDKVVGAGEFGEVCSG--RLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 675

  Fly  1249 AKFNHPNMVHLIGVCFDRQPYYIVLELLAGGDLQKFLRENRNTPERPSLLTMKDLLFCALDVAKG 1313
            .:|:|||::.|.||....:|..||.|.:..|.|..|||::      .:..|:..|:.....:|.|
  Rat   676 GQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKH------DAQFTVIQLVGMLRGIASG 734

  Fly  1314 CRYMESKRFIHRDIAARNCLLSSKGPGRVVKIADFGMSR---DIYRSDYYRKGGKAMLPIKWMPP 1375
            .:|:....::|||:||||.|::|   ..|.|::|||:||   |...:.|..:|||  :||:|..|
  Rat   735 MKYLSDMGYVHRDLAARNILINS---NLVCKVSDFGLSRVLEDDPEAAYTTRGGK--IPIRWTSP 794

  Fly  1376 EAFLDGIFTSKTDVWSFGILLWEVFSLGRSPYPGQHNTQVMELVVRGGRLGSPTECPVSIYKVMA 1440
            ||.....|||.:||||:||:||||.|.|..||....|..|::.|..|.||..|.:||.::|::|.
  Rat   795 EAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAALYQLML 859

  Fly  1441 DCWNPTPEDRPTF---ITLLEHL 1460
            |||.....:||.|   :::|:.|
  Rat   860 DCWQKDRNNRPKFEQIVSILDKL 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlkNP_652600.1 MAM 288..447 CDD:99706
MAM 505..689 CDD:99706
PTKc_ALK_LTK 1186..1462 CDD:270632 108/296 (36%)
Epha3NP_113752.2 EphR_LBD_A3 29..201 CDD:198449
FN3 <323..>516 CDD:442628
FN3 437..528 CDD:238020
EphA2_TM <566..619 CDD:464211 15/82 (18%)
PTKc_EphR_A 617..883 CDD:270651 104/279 (37%)
SAM_EPH-A3 913..975 CDD:188943
PDZ-binding. /evidence=ECO:0000255 982..984
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.