DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Alk and alk

DIOPT Version :9

Sequence 1:NP_001261027.1 Gene:Alk / 53425 FlyBaseID:FBgn0040505 Length:1701 Species:Drosophila melanogaster
Sequence 2:XP_031758085.1 Gene:alk / 100495071 XenbaseID:XB-GENE-490262 Length:1368 Species:Xenopus tropicalis


Alignment Length:1501 Identity:475/1501 - (31%)
Similarity:677/1501 - (45%) Gaps:306/1501 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 ATPSSEYEYELGVKCNFETPCSWTWGNYS------DGFQVITGTELSKRNLTGLLPGPAAD-SID 331
            |||.:.:.::    ||||:||..   .||      ..:::.|..||.:|.   :..||..| |.:
 Frog     8 ATPRTRHNFD----CNFESPCDL---EYSLPPYGAKAWRIATAEELLQRY---IFSGPPGDYSEN 62

  Fly   332 DANGHFLYARVNPSSRPLNLTSPEFSTTMEKCFLE--VYMHQSDMSHG----LSRVVVELLHT-- 388
            ...|||||...:.:..|: |.||...::...|.:|  ||..::....|    ::|...|:|.|  
 Frog    63 STTGHFLYLNASTAHNPI-LLSPWLKSSSRNCLVEVAVYTQKNGRYIGHVQPINRTSYEVLFTPR 126

  Fly   389 -AESSWVPAEILGDNVRQWTRKVYRLGRVSRDFRIVFEVVPDLRVGQKGHV-ALDNLRMVNCFPE 451
             .::.||  ::.|           .:|.:.|.|||..|.|.:    ::|.| |:|:..:.||...
 Frog   127 QKKTGWV--QLRG-----------VIGHMERPFRISLEYVAE----ERGTVAAVDSFAIRNCSQG 174

  Fly   452 GTKSEKCSTSQV-KCTSSKVPVCIHLPRICDITRDCDEAEDEQQSCDKIPYGGRCDFEEDWCGWR 515
            .....|.:...| .|.:.   :.|.|.::|:...||:|.|||...|..:|.|..|.|||..|||.
 Frog   175 NLSGLKMALDGVFNCRNG---MAIKLRQVCNFIPDCEEEEDEGDLCRNLPPGFYCMFEEGSCGWA 236

  Fly   516 DSGKTTLTWSRHTGSSPTHDTGPDGDHTMQHLQNNTSGYYMLVNMNQHMNNSEKNSIIGFASNAI 580
            .....:.......|.||                    |..:.:|    ::||:.      |:..:
 Frog   237 LDHLNSRWQVGSVGKSP--------------------GSVLYLN----VSNSKS------AARDV 271

  Fly   581 MVSKTFNPPPSVHGNPDSPYRN-SCVVRFFIHQFGKNPGSINLSVVEMKEKENITTTLWWSTKNQ 644
            :.|..|          .:|.:| ||.:|......|...|:|::.:|:.|..:..|..||.....:
 Frog   272 LSSVLF----------PAPLKNSSCELRMSFLLKGFLLGNISVLLVDNKTGKVRTRPLWSFENGE 326

  Fly   645 G-SDWMRAEYVLPNI-----TSKYYLQFEARMGMRIYSDVAVDDFSLSPECFGLNIPEDHLGGYN 703
            | ..|......|.::     :.:::|:..........|.:|.|:.|||..|:..:..|..|...:
 Frog   327 GLGVWQHIVLYLKDVMERFRSHRFWLEIHTSWAQESDSIIAFDNVSLSLGCYLTSNGELPLQTVS 391

  Fly   704 YW-------------------DVRQNLKSPTYKDFEYTNYLELTTCDTRGMIGPSQAQCEAAYRE 749
            |.                   :..::|.|..:.......|...|||...|..||||..|:..|  
 Frog   392 YLSSNLLMESSNQRLNDTEGDEQEEDLNSGLHPSSAGAGYWHFTTCGATGPYGPSQKLCDDTY-- 454

  Fly   750 QNKTHVLREVHVVEDQSSYKGMQKWKVPHEGHYTIIAKGASGGLGSGGVGSSRGSVAVAILELHK 814
                   :...|.......||:|.|:||....|.|...||:||.|......::|...:.|.||.|
 Frog   455 -------KNFSVEMGTGGLKGVQMWRVPETNTYRISGYGAAGGNGGKTPTLAQGISLIGIFELQK 512

  Fly   815 NEELYFLVGQQGENACIKSMGVLKEAGCGTDHDLDLAQYSFRSKQDMVKNIYIENGAGGGGGG-- 877
            :|.||.||||:||:||.::..||:....|.:.:::         .::..|..:...|||||||  
 Frog   513 DEILYILVGQKGEDACPRANSVLQMVCIGENTEIE---------DELRINGSVSEWAGGGGGGGG 568

  Fly   878 -SYVFLLNQAKNEAVPLLVAGGGGGLGIGQYIDEDFQHGQKAK--PLQAPESGQ----INGEPLN 935
             :|||.:...|  .||||:|.||||..          :..||.  |.:..||..    :||:   
 Frog   569 ATYVFKMESGK--PVPLLIAAGGGGRA----------YRSKASVIPPERLESNYTIPGMNGK--- 618

  Fly   936 KKTAGPGGGWRAKEDQALSPTYGAALLQGGRGGHSCYVELADNGTSVHRHG---QGGFGGGGGGC 997
            ...||.||||   .|....|..|.:|::|..||.||       ..:|.:.|   :||||||||||
 Frog   619 SGAAGGGGGW---NDHTALPWAGKSLMEGAIGGESC-------PQAVKKWGWETRGGFGGGGGGC 673

  Fly   998 NTGGGGGGYAGGDV---YLTESNGEGGSSYISPSRSLREISEIHAGASSGPGAIIIIP--AIEGC 1057
            ::|||||||.||:.   ...|.:|..|.|:|||.                 |.:...|  .|||.
 Frog   674 SSGGGGGGYIGGNAAEGNSAEMDGLEGVSFISPR-----------------GVVYTPPLKVIEGH 721

  Fly  1058 G------------CDYRCVALDEFRSKVRCICPDGWSLKRDNHTACEIREEAGKSSFQYLVSILM 1110
            |            |:.....||....::.|:|..|..|..|. .:| |.|....:...:|...|:
 Frog   722 GEVEIKLHLNCSHCEMDECLLDPESKRIVCLCERGTVLAEDG-VSC-IDEALAPAQETHLPLSLV 784

  Fly  1111 ISLAVLFICIAALI-----FMLYNRYQRKKQSKKRHKM-LVEQDLQLTRLRNNIDDSNLNNFNPN 1169
            :|: |....:||||     .|:.  |::|.|..:..:| |...|.:|:::|.:   :.:.::|||
 Frog   785 LSI-VTSALVAALILAFSGIMIV--YRKKHQELQAIQMELQSPDYKLSKVRTS---TIMTDYNPN 843

  Fly  1170 YGCDGILNGHIDVNSLPQVARDSLQLVNALGKGAFGEVYMALYRHRDGDAVEMGVAVKTLREDPK 1234
            |...|.:.   .:..|.:|.|.::.|:..||.|||||||.........|...:.||||||.|...
 Frog   844 YCFAGKVT---SIGDLKEVPRKNISLIRGLGHGAFGEVYEGQVLGTPSDPNPLKVAVKTLPEVCS 905

  Fly  1235 REKEEDFLKEAAIMAKFNHPNMVHLIGVCFDRQPYYIVLELLAGGDLQKFLRENRNTPERPSLLT 1299
            .:.|.|||.||.|::||:|.|:|..|||.....|.:|:|||:|||||:.|||:.|....:||.:|
 Frog   906 EQDELDFLMEALIISKFSHQNIVRCIGVSLQALPRFILLELMAGGDLKSFLRQTRPRLNQPSSIT 970

  Fly  1300 MKDLLFCALDVAKGCRYMESKRFIHRDIAARNCLLSSKGPGRVVKIADFGMSRDIYRSDYYRKGG 1364
            |.|||..:.|:|:||:|:|...|||||||||||||:.:|.|||.||.||||:|||||:.||||||
 Frog   971 MLDLLNVSCDIAQGCKYLEENHFIHRDIAARNCLLTCQGSGRVAKIGDFGMARDIYRASYYRKGG 1035

  Fly  1365 KAMLPIKWMPPEAFLDGIFTSKTDVWSFGILLWEVFSLGRSPYPGQHNTQVMELVVRGGRLGSPT 1429
            .||||:||||||||::||||||||.||||:||||:||||..|||.:.|.:|:|.|..|||:..|.
 Frog  1036 CAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMDPPK 1100

  Fly  1430 ECPVSIYKVMADCWNPTPEDRPTFITLLEHLTACTQDASIMNAPLPNILGPTASERDDTVIRPPN 1494
            .||..:|::|..||...|||||.|..:||.:..|.||..::|..||...||...:.:...:|..:
 Frog  1101 NCPGPVYRIMTQCWQHQPEDRPNFAIILERINYCKQDPDVINTSLPVEYGPVVEDEEKAPVRSDD 1165

  Fly  1495 GEEFCLAVPDYLVP--------LPPGGSNNPSMASGSGYVPELQRQQMSSCTPPAVTSPAAP--- 1548
            .:    .:|..|||        |.|..|..|...:..|.:|....      |.|.|.:.:.|   
 Frog  1166 PD----VIPPALVPPEKPIKDDLQPLRSPPPVPPNPRGKIPNKVH------TEPRVPAKSRPEGG 1220

  Fly  1549 --HPRPVENIAPTSGDCWETSFILPNSKVE------------PPVVGS---GHDVPLAGGEEAKL 1596
              |...|              |..||.:.|            .|..||   |..|....|...| 
 Frog  1221 GGHDNAV--------------FARPNPQAELRGSRNKPTNLWNPTYGSWFTGKTVVKTPGPPDK- 1270

  Fly  1597 ISLDTPQPTPTTIQPPLSF------------ASQLDG--ITLDPSALTKSL-----------PNG 1636
                   |||....||.|.            .|:|.|  :.|:||.||.::           |.|
 Frog  1271 -------PTPEKENPPSSVTEGNCTAANRVAGSRLPGSSLLLEPSTLTSNVQEVPLFRLRHFPCG 1328

  Fly  1637 NAKQSY 1642
            .....|
 Frog  1329 TVNYGY 1334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlkNP_001261027.1 MAM 288..450 CDD:279023 50/178 (28%)
MAM 288..447 CDD:99706 48/175 (27%)
MAM 505..691 CDD:279023 41/192 (21%)
MAM 505..689 CDD:99706 40/190 (21%)
PTKc_ALK_LTK 1186..1462 CDD:270632 153/275 (56%)
TyrKc 1193..1460 CDD:197581 151/266 (57%)
alkXP_031758085.1 MAM 18..172 CDD:421533 49/177 (28%)
MAM 226..376 CDD:421533 40/189 (21%)
PTKc_ALK_LTK 857..1133 CDD:270632 153/275 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 324 1.000 Domainoid score I1203
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 612 1.000 Inparanoid score I899
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D27151at33208
OrthoFinder 1 1.000 - - FOG0002954
OrthoInspector 1 1.000 - - otm49452
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4020
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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