DRSC/TRiP Functional Genomics Resources

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Protein Alignment ATP5MC2 and Vha16-3

DIOPT Version :9

Sequence 1:XP_016874949.1 Gene:ATP5MC2 / 517 HGNCID:842 Length:198 Species:Homo sapiens
Sequence 2:NP_001189086.1 Gene:Vha16-3 / 317846 FlyBaseID:FBgn0028667 Length:158 Species:Drosophila melanogaster


Alignment Length:126 Identity:35/126 - (27%)
Similarity:57/126 - (45%) Gaps:27/126 - (21%)


- Green bases have known domain annotations that are detailed below.


Human    82 LSAVVLKRPEILTDE----------SLSSLAVSCPLT-SLVSSRSFQTSAISRDIDTAAKFIGAG 135
            ::|:.:.|||::...          ::..|.||..:. ||..|.:.:...|         .:.||
  Fly    44 IAAMAVMRPELIMKSIIPVVMAGIIAIYGLVVSVLIAGSLSDSYTIRKGYI---------HLAAG 99

Human   136 AATVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLI 194
             .:||.||..||  ||.|..:.:.|.|:.|    :||...||....:|.:||:.|:||..:
  Fly   100 -LSVGFAGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFAEVLGLYGLIVAIYL 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ATP5MC2XP_016874949.1 ATP9 124..198 CDD:164765 24/73 (33%)
Vha16-3NP_001189086.1 V_ATP_synt_C 16..121 CDD:130170 22/86 (26%)
ATP-synt_Vo_c_ATP6C_rpt2 91..156 CDD:349416 25/79 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0636
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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