DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDGFRB and tor

DIOPT Version :9

Sequence 1:NP_002600.1 Gene:PDGFRB / 5159 HGNCID:8804 Length:1106 Species:Homo sapiens
Sequence 2:NP_476762.1 Gene:tor / 35717 FlyBaseID:FBgn0003733 Length:923 Species:Drosophila melanogaster


Alignment Length:899 Identity:222/899 - (24%)
Similarity:343/899 - (38%) Gaps:271/899 - (30%)


- Green bases have known domain annotations that are detailed below.


Human   264 FLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI-----NITV---VESG---YVR 317
            |.:|...|.|.....|:|      ||...| ::|.|...|.|:     |..:   :||.   .:.
  Fly    91 FQIDWVQHSRGTEPAPNA------TYIIRV-DAVKDDNKETALYLSDDNFLILPGLESNSTHNIT 148

Human   318 LLGEVGTLQFAELHRSRTLQVVFEAYPPPTVLWFKDNRTLGDSSAGEIALSTRNVSETRYV---S 379
            .|...|...::.:.:.:|...:...|.|              |..|.:.|       .|:|   .
  Fly   149 ALAMHGDGSYSLIAKDQTFATLIRGYQP--------------SKMGAVNL-------LRFVPQPD 192

Human   380 ELTLVRVKV-----AEAG-HYTMRAF-------HEDAEVQ--------------LSFQLQINVPV 417
            :|..:..::     ||:. ::.|.::       .|..|||              |.|..|.:|.|
  Fly   193 DLHHIAAEIEWKPSAESNCYFDMVSYSTNSVNMDEPLEVQFRDRKKLYRHTVDNLEFDKQYHVGV 257

Human   418 RVLELS---ESH-----------------------PDSGEQTVRCRGRGMPQ---PNIIWSACRD 453
            |.:.:.   ||.                       |...|.....:.:.:|.   .||.|:.   
  Fly   258 RTVNIMNRLESDLQWLPIAVPSCLDWYPYNYTLCPPHKPENLTVTQKQYLPNILALNITWAR--- 319

Human   454 LKRCPRELPPT-------LLGNSSEEESQLETNVTYWEEEQ------EFEV-----------VST 494
                ||.||..       |....:|....|:.|.:::...:      .|||           ||.
  Fly   320 ----PRYLPDNYTLHIFDLFKGGTELNYTLDQNRSHFYVPKITVLGSHFEVHLVAQSAGGKNVSG 380

Human   495 LRLQHVDRPLSVRCTLRNAVGQDTQEVIVVPHSLPFKVVVISAILALVVLTIISLIILIMLWQKK 559
            |.|..|.|.:.:      :.|...:.|:       |.:|.|..||.|..||..          ::
  Fly   381 LTLDKVHRGVLL------SEGNMVKLVL-------FIIVPICCILMLCSLTFC----------RR 422

Human   560 PRYEIRWKVIESVSSDGHEYIYVDPM-------------QLPYDSTWELPRDQLVLGRTLGSGAF 611
            .|.|::...:::..:...|: ::..|             .|......|:....::|...||.|||
  Fly   423 NRSEVQALQMDAKDAKASEF-HLSLMDSSGLLVTLSANESLEVMDELEVEPHSVLLQDVLGEGAF 486

Human   612 GQVVEATAHGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTK-GG 675
            |.|    ..|:...:   :||||:||......:..|...|::::..:|.|.|:|.::|..|: ..
  Fly   487 GLV----RRGVYKKR---QVAVKLLKDEPNDEDVYAFKCEIQMLKAVGKHPNIVGIVGYSTRFSN 544

Human   676 PIYIITEYCRYGDLVDYLHRNKHTF------------LQHHSDKR---RPPSAELYSNALPVGLP 725
            .:.::.|||..|.|.::| |.:..|            |:.:.|.|   |.|...::.....:...
  Fly   545 QMMLLIEYCSLGSLQNFL-REEWKFRQEQNAIGLKKNLEQNVDNRRFNRLPRNSIHDRIEDINNS 608

Human   726 LPSHVSLTGESD---------------------GGYMDMSKDESV--DYVPML------------ 755
            :.|.|....|||                     .|| .:...|::  .|:|..            
  Fly   609 MLSTVEEESESDQTHSSRCETYTLTRITNAADNKGY-GLEDIENIGGSYIPKTAEAPKDRPKRKL 672

Human   756 ----------DMKGDVKYADIESSNYMAPYD--NYVPSAPERTCRATLINESPVLSYMDLVGFSY 808
                      |.|.|.|....|:..|....|  :..|..|              |.|.||:..:.
  Fly   673 KPQPKKDSKQDFKSDNKKRIFENKEYFDCLDSSDTKPRIP--------------LKYADLLDIAQ 723

Human   809 QVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNY-ISKGSTFLPLKWMAP 872
            |||.||||||....||||||||||||...:.:||.||||:||:..::.| .|.||..||:||:|.
  Fly   724 QVAVGMEFLAQNKVVHRDLAARNVLISVDRSIKIADFGLSRDVYHENVYRKSGGSGKLPIKWLAL 788

Human   873 ESIFNSLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQPAHASDEIYEIM 937
            ||:.:.:||:.|||||||:||:||.||||.|||.:..:: ....:::|:||.:|...:.|::.:|
  Fly   789 ESLTHQVYTSQSDVWSFGVLLYEITTLGGMPYPSVSPSD-LLQLLRQGHRMKRPEGCTQEMFSLM 852

Human   938 QKCWEEKFEIRPPFSQLVLLL-----------ERLLGEGYKKKYQQVDEEFLRS 980
            :.||......||.||.|...|           |||      |:.|...|..|:|
  Fly   853 ESCWSSVPSHRPTFSALKHRLGGMILATNDVPERL------KQLQAATESKLKS 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDGFRBNP_002600.1 ig 37..114 CDD:278476
IG 40..110 CDD:214652
IG_like 222..310 CDD:214653 14/50 (28%)
Ig1_PDGFR-alphabeta 228..312 CDD:143269 14/55 (25%)
Ig4_PDGFR-alpha 314..415 CDD:143267 21/133 (16%)
Ig 425..523 CDD:299845 26/147 (18%)
PTKc_PDGFR_beta 562..953 CDD:133238 135/467 (29%)
Pkinase_Tyr 600..953 CDD:285015 130/416 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1019..1106
torNP_476762.1 FN3 199..261 CDD:214495 13/61 (21%)
STYKc 475..873 CDD:214568 132/421 (31%)
PTKc 479..873 CDD:270623 131/417 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5472
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.960

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