DRSC/TRiP Functional Genomics Resources

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Protein Alignment PDGFRB and Ror

DIOPT Version :10

Sequence 1:NP_002600.1 Gene:PDGFRB / 5159 HGNCID:8804 Length:1106 Species:Homo sapiens
Sequence 2:NP_476962.1 Gene:Ror / 34367 FlyBaseID:FBgn0010407 Length:685 Species:Drosophila melanogaster


Alignment Length:595 Identity:135/595 - (22%)
Similarity:229/595 - (38%) Gaps:174/595 - (29%)


- Green bases have known domain annotations that are detailed below.


Human   421 ELSESHPDSGEQTVRCRGRGMPQPNIIWSACRDLKRCPRELPPTLLGNSSEEESQLETNVTYWEE 485
            ||.|:.....|..:..|     .|.|......|.::.|:......||.:.|.:   :|...|||:
  Fly   185 ELLENELCQKEYAIAKR-----HPVIGMVGVEDCQKLPQHKDCLSLGITIEVD---KTENCYWED 241

Human   486 EQEFEVVST--------LRLQHVDRPLSVRCTLRNAVGQD------------------TQEVIVV 524
            ...:..|:.        ||...:.:.:|   .....:||:                  ::|.|:.
  Fly   242 GSTYRGVANVSASGKPCLRWSWLMKEIS---DFPELIGQNYCRNPGSVENSPWCFVDSSRERIIE 303

Human   525 PHSLP-----FKVVVISAILALVVLTIISLIILIMLWQKKPRYEIRWKVIESVSSDGHEYIYVDP 584
            ...:|     ..:.::....|::::.||  |..|:|::::.......:.|.::::...:......
  Fly   304 LCDIPKCADKIWIAIVGTTAAIILIFII--IFAIILFKRRTIMHYGMRNIHNINTPSADKNIYGN 366

Human   585 MQLPYDSTWELPR-------DQLVLG-----------------------RTLGSGAFGQVVEATA 619
            .||  ::..:..|       |.:.|.                       ..||.||||:|.:...
  Fly   367 SQL--NNAQDAGRGNLGNLSDHVALNSKLIERNTLLRINHFTLQDVEFLEELGEGAFGKVYKGQL 429

Human   620 HGLSHSQATMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNVVNLLGACTKGGPIYIITEYC 684
              |..::.|:.||:|.||..|....:|....|::::|.| .|.|:|.:||......|..::.||.
  Fly   430 --LQPNKTTITVAIKALKENASVKTQQDFKREIELISDL-KHQNIVCILGVVLNKEPYCMLFEYM 491

Human   685 RYGDLVDYLHRNKHTFLQHHSDKRRPPSAELYSNALPVGLPLPSHVSLTGESDGGYMDMSKDESV 749
            ..|||.::|..|..|                                                  
  Fly   492 ANGDLHEFLISNSPT-------------------------------------------------- 506

Human   750 DYVPMLDMKGDVKYADIESSNYMAPYDNYVPSAPERTCRATLINESPVLSYMDLVGFSYQVANGM 814
                                                        |...||.::.:..:.|::.||
  Fly   507 --------------------------------------------EGKSLSQLEFLQIALQISEGM 527

Human   815 EFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNSL 879
            ::|::.:.|||||||||.|:.||.:|||.||||:|||.....|..:..:.||::||..|||....
  Fly   528 QYLSAHHYVHRDLAARNCLVNEGLVVKISDFGLSRDIYSSDYYRVQSKSLLPVRWMPSESILYGK 592

Human   880 YTTLSDVWSFGILLWEIFTLGGTPYPELPMNEQFYNAIKRGYRMAQPAHASDEIYEIMQKCWEEK 944
            :||.|||||||::||||::.|..||... .|::..|.|:....::.|.:....:|.:|.:||.|:
  Fly   593 FTTESDVWSFGVVLWEIYSYGMQPYYGF-SNQEVINLIRSRQLLSAPENCPTAVYSLMIECWHEQ 656

Human   945 FEIRPPFSQL 954
            ...||.|:.:
  Fly   657 SVKRPTFTDI 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDGFRBNP_002600.1 ig 37..114 CDD:395002
Ig strand B 50..54 CDD:409353
Ig strand C 60..63 CDD:409353
Ig strand E 83..87 CDD:409353
Ig strand F 97..101 CDD:409353
IgI_PDGFR-alphabeta 212..311 CDD:409447
Ig strand A 212..216 CDD:409447
Ig strand A' 223..227 CDD:409447
Ig strand B 229..238 CDD:409447
Ig strand C 243..248 CDD:409447
Ig strand C' 251..253 CDD:409447
Ig strand D 257..265 CDD:409447
Ig strand E 270..278 CDD:409447
Ig strand F 288..294 CDD:409447
Ig strand G 299..305 CDD:409447
Ig4_PDGFR 314..415 CDD:409445
Ig 431..519 CDD:472250 19/113 (17%)
Ig strand B 432..436 CDD:409353 0/3 (0%)
Ig strand C 445..449 CDD:409353 1/3 (33%)
Ig strand E 493..497 CDD:409353 1/11 (9%)
Ig strand F 504..510 CDD:409353 1/5 (20%)
PTKc_PDGFR_beta 562..953 CDD:133238 104/420 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1019..1106
RorNP_476962.1 CRD_TK_ROR_like 39..228 CDD:143568 11/47 (23%)
KR 235..312 CDD:214527 12/79 (15%)
PTKc_Ror 404..673 CDD:270642 98/361 (27%)
Blue background indicates that the domain is not in the aligned region.

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