DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDGFRA and htl

DIOPT Version :9

Sequence 1:NP_001334757.1 Gene:PDGFRA / 5156 HGNCID:8803 Length:1114 Species:Homo sapiens
Sequence 2:NP_524394.2 Gene:htl / 42160 FlyBaseID:FBgn0010389 Length:729 Species:Drosophila melanogaster


Alignment Length:846 Identity:218/846 - (25%)
Similarity:324/846 - (38%) Gaps:286/846 - (33%)


- Green bases have known domain annotations that are detailed below.


Human   242 EMEALKTVYKSGETIVVTCAVFNNEVVDLQWTYPGEV---KGKGITMLEEIKVPSIKL-VYTLTV 302
            :|..|:| ..||..:.:.|....|...::.|...|.|   :|.|          |:|. .:|||:
  Fly   108 KMSFLQT-RPSGSLLTLNCHALGNPEPNITWYRNGTVDWTRGYG----------SLKRNRWTLTM 161

Human   303 PEATVKDSGDYECAARQATREVKEMKKVTIS--VHEKGFIEIKPTFSQLEAVNLHEVKHFVVEVR 365
            .:....|.|:|.|....:...::...:|.:|  |:.|..:...|.                    
  Fly   162 EDLVPGDCGNYTCKVCNSLGCIRHDTQVIVSDRVNHKPILMTGPL-------------------- 206

Human   366 AYPPPRISWLKNNLTLIENLTEITTDVEKIQEIRYRSKLKLIRA--------KEEDSGHYTIVAQ 422
                        ||||:.|.|       .....:|.|.|...:|        ....|.:.:|:|:
  Fly   207 ------------NLTLVVNST-------GSMHCKYLSDLTSKKAWIFVPCHGMTNCSNNRSIIAE 252

Human   423 NEDAVKSYTFELLTQVPSSILDLVDDHHGSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSW 487
            ::|.                ||.|:          ||...||       |..|.:........|.
  Fly   253 DKDQ----------------LDFVN----------VRMEQEG-------WYTCVESNSLGQSNST 284

Human   488 TILANNVSNIITEIHSRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSELTV 552
            ..|     .::..:|     .:|..|....:..|..|...   :.|.                  
  Fly   285 AYL-----RVVRSLH-----VLEAGVASGSLHSTSFVYIF---VFGG------------------ 318

Human   553 AAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESI----------SPDG------------- 594
                  |:.|.:.:|.|...|.|.|....::.| ||::          .|:|             
  Fly   319 ------LIFIFMTTLFVFYAIRKMKHEKVLKQR-IETVHQWTKKVIIFKPEGGGDSSGSMDTMIM 376

Human   595 ----------------------HEYIYVDPMQLPYDSRWEFPRDGLVLGRVLGSGAFGKVVEGTA 637
                                  :||      :.|.||.||.||..||||..||.||||:||....
  Fly   377 PVVRIQKQRTTVLQNGNEPAPFNEY------EFPLDSNWELPRSHLVLGATLGEGAFGRVVMAEV 435

Human   638 YGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYC 702
            ....       |||||:|......:..:|:.|:::|..:|.|:||:||||.|:::||:|:|.||.
  Fly   436 NNAI-------VAVKMVKEGHTDDDIASLVREMEVMKIIGRHINIINLLGCCSQNGPLYVIVEYA 493

Human   703 FYGDLVNYLHKNRDSFLSHHPEKPKKELDIFGLNPADESTRSYVILSFENNGDYMDMKQADTTQY 767
            .:|:|.::|:|||.                ||.:                       :..|::|.
  Fly   494 PHGNLKDFLYKNRP----------------FGRD-----------------------QDRDSSQP 519

Human   768 VPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDNSEGLTLLDLLSFTYQVARGME 832
            .|                  ..||..                     :|..||:.|.:|:||||:
  Fly   520 PP------------------SPPAHV---------------------ITEKDLIKFAHQIARGMD 545

Human   833 FLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLY 897
            :|||:.|:||||||||||::...::||.||||||||.....|....:..||:|||||||:.:..|
  Fly   546 YLASRRCIHRDLAARNVLVSDDYVLKIADFGLARDIQSTDYYRKNTNGRLPIKWMAPESLQEKFY 610

Human   898 TTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEP 962
            .:.|||||||||||||.:.|..|||.:|.....|..:.||.||.||...:..:|.:|.:||:...
  Fly   611 DSKSDVWSYGILLWEIMTYGQQPYPTIMSAEELYTYLMSGQRMEKPAKCSMNIYILMRQCWHFNA 675

Human   963 EKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAVARMRVDSDNAYIGVTYKNEEDKLKD 1027
            :.||.|..:.|.::.||  |.|:.|  :.:|....|.|...     ||..      ::|.|.|:.
  Fly   676 DDRPPFTEIVEYMDKLL--QTKEDY--LDVDIANLDTPPST-----SDEE------EDETDNLQK 725

Human  1028 W 1028
            |
  Fly   726 W 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDGFRANP_001334757.1 None
htlNP_524394.2 Ig 112..191 CDD:299845 21/89 (24%)
IG_like 113..191 CDD:214653 20/88 (23%)
IG_like 205..289 CDD:214653 26/160 (16%)
PKc_like 404..692 CDD:304357 133/372 (36%)
STYKc 416..688 CDD:214568 126/356 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0200
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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