DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDGFRA and tor

DIOPT Version :9

Sequence 1:NP_001334757.1 Gene:PDGFRA / 5156 HGNCID:8803 Length:1114 Species:Homo sapiens
Sequence 2:NP_476762.1 Gene:tor / 35717 FlyBaseID:FBgn0003733 Length:923 Species:Drosophila melanogaster


Alignment Length:905 Identity:223/905 - (24%)
Similarity:356/905 - (39%) Gaps:259/905 - (28%)


- Green bases have known domain annotations that are detailed below.


Human   291 VPSIKLVYTLTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEIKPTFSQLEAVNL- 354
            :|.::...|..:....:...|.|...|          |..|.:...:|:   :|  |::.|||| 
  Fly   136 LPGLESNSTHNITALAMHGDGSYSLIA----------KDQTFATLIRGY---QP--SKMGAVNLL 185

Human   355 ------HEVKHFVVEVRAYPPPR-------ISWLKNNLTLIENLTEITTDVEKIQEIRYRSKLKL 406
                  .::.|...|:...|...       :|:..|::.:.|.|           |:::|.:.||
  Fly   186 RFVPQPDDLHHIAAEIEWKPSAESNCYFDMVSYSTNSVNMDEPL-----------EVQFRDRKKL 239

Human   407 IRAKEEDSGHYTIVAQNEDAVKSY-----TFELLTQVPS----------SILD-------LVDDH 449
            .|        :|:  .|.:..|.|     |..::.::.|          |.||       |...|
  Fly   240 YR--------HTV--DNLEFDKQYHVGVRTVNIMNRLESDLQWLPIAVPSCLDWYPYNYTLCPPH 294

Human   450 HGSTGGQTVR-----------CTAEGTPLPDIEWMICKDIKKCNNETSWTILANN----VSNIIT 499
            .......|.:           ..|....|||...:...|:.|...|.::|:..|.    |..|..
  Fly   295 KPENLTVTQKQYLPNILALNITWARPRYLPDNYTLHIFDLFKGGTELNYTLDQNRSHFYVPKITV 359

Human   500 -----EIH----SRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSELTVAAA 555
                 |:|    |.....|.| :|..||.         :.:|.:|...:|               
  Fly   360 LGSHFEVHLVAQSAGGKNVSG-LTLDKVH---------RGVLLSEGNMVK--------------- 399

Human   556 VLVLLVIVIISLIVLV--VIWKQKPRYEIRWRVIESISPDGHEYIYVDPM-------------QL 605
             |||.:||.|..|:::  :.:.::.|.|::...:::......|: ::..|             .|
  Fly   400 -LVLFIIVPICCILMLCSLTFCRRNRSEVQALQMDAKDAKASEF-HLSLMDSSGLLVTLSANESL 462

Human   606 PYDSRWEFPRDGLVLGRVLGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSEL 670
            ......|.....::|..|||.||||.|..|.       ....:||||:||......:..|...|:
  Fly   463 EVMDELEVEPHSVLLQDVLGEGAFGLVRRGV-------YKKRQVAVKLLKDEPNDEDVYAFKCEI 520

Human   671 KIMTHLGPHLNIVNLLGACTK-SGPIYIITEYCFYGDLVNYLHK--------------------- 713
            :::..:|.|.|||.::|..|: |..:.::.|||..|.|.|:|.:                     
  Fly   521 QMLKAVGKHPNIVGIVGYSTRFSNQMMLLIEYCSLGSLQNFLREEWKFRQEQNAIGLKKNLEQNV 585

Human   714 -----NR--------------DSFLSHHPEKPKKE------LDIFGL----NPADESTRSYVILS 749
                 ||              :|.||...|:.:.:      .:.:.|    |.||  .:.|.:..
  Fly   586 DNRRFNRLPRNSIHDRIEDINNSMLSTVEEESESDQTHSSRCETYTLTRITNAAD--NKGYGLED 648

Human   750 FENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKKKSMLDSEVKNLLSDDNSE- 813
            .||.|.....|.|:..:..|..:.|...|    :.|..|..:..||:...:.|..:.|...::: 
  Fly   649 IENIGGSYIPKTAEAPKDRPKRKLKPQPK----KDSKQDFKSDNKKRIFENKEYFDCLDSSDTKP 709

Human   814 --GLTLLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNY-V 875
              .|...|||....|||.||||||....|||||||||||::..:.:||.||||:||:.|::.| .
  Fly   710 RIPLKYADLLDIAQQVAVGMEFLAQNKVVHRDLAARNVLISVDRSIKIADFGLSRDVYHENVYRK 774

Human   876 SKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIKSGYRM 940
            |.||..||:||:|.||:...:||:.|||||:|:||:||.:|||.|||.:. .|.....::.|:||
  Fly   775 SGGSGKLPIKWLALESLTHQVYTSQSDVWSFGVLLYEITTLGGMPYPSVS-PSDLLQLLRQGHRM 838

Human   941 AKPDHATSEVYEIMVKCWNSEPEKRPSFYHLSE------IVENLLPGQYKKSYEKIHLDFLKSDH 999
            .:|:..|.|::.:|..||:|.|..||:|..|..      :..|.:|.:.|:              
  Fly   839 KRPEGCTQEMFSLMESCWSSVPSHRPTFSALKHRLGGMILATNDVPERLKQ-------------- 889

Human  1000 PAVARMRVDSDNAYIGVTYKNEEDKLKDWEGGLDEQRLSADSGYIIPLPDIDPVPEEEDL 1059
                             .....|.|||..: ||:.:              ::.||.||:|
  Fly   890 -----------------LQAATESKLKSCD-GLNSK--------------VEQVPCEEEL 917

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDGFRANP_001334757.1 None
torNP_476762.1 FN3 199..261 CDD:214495 16/82 (20%)
STYKc 475..873 CDD:214568 136/411 (33%)
PTKc 479..873 CDD:270623 135/407 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24416
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

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