DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PDE6C and Pde11

DIOPT Version :9

Sequence 1:NP_006195.3 Gene:PDE6C / 5146 HGNCID:8787 Length:858 Species:Homo sapiens
Sequence 2:NP_001286044.1 Gene:Pde11 / 35107 FlyBaseID:FBgn0085370 Length:1451 Species:Drosophila melanogaster


Alignment Length:817 Identity:266/817 - (32%)
Similarity:416/817 - (50%) Gaps:85/817 - (10%)


- Green bases have known domain annotations that are detailed below.


Human    48 MSFSELTQVEESALCLELLWTVQEEGGTPEQGVHRALQRLAHLLQADRCSMFLCRSRNGIPE--- 109
            :|.:||.|::|..|..||:..:..|... ....|:.||.::.||.|||.|:||.:.|...|:   
  Fly   393 LSRNELKQLDEKELIFELVKDICNELEV-RTLCHKILQNVSILLNADRGSLFLVQGRCNGPDGLK 456

Human   110 --VASRLLDVTPTSKFEDNLVGPDKEVVFPLDIGIVGWAAHTKKTHNVPDVKKNSHFSDFMDKQT 172
              :.|:|.||.|.|..|:  :....||......||.|..|.:.:..|:||..::..|:..:|..|
  Fly   457 KCLVSKLFDVCPRSTVEE--MEQQDEVRVAWGTGIAGHVAESGEPVNIPDAYQDERFNCEIDSLT 519

Human   173 GYVTKNLLATPIVVGK-EVLAVIMAVNKVNASEFSKQDEEVFSKYLNFVSIILRLHHTSYMYNIE 236
            ||.||.||..||.... :|:.|...:||:|...||:.||:|||.||.|..|.||.........:|
  Fly   520 GYRTKALLCMPIKDSSGDVIGVAQVINKMNGECFSEIDEKVFSSYLQFCGIGLRNAQLYEKSQLE 584

Human   237 SRRSQILMWSANKVFEELTDVERQFHKALYTVRSYLNCERYSIGLLDMTKEKEFYDEWPIKLGEV 301
            .:|:|:|:..|..:|||.:.:|....:.|..::|.:.|:|..|.|:.                  
  Fly   585 IKRNQVLLDLARMIFEEQSTIEHMVFRILTHMQSLIQCQRVQILLVH------------------ 631

Human   302 EPYKGPKTPDGREVNFYKIIDYILH--GKEEIKVIPTPPADHWTLISGLPTYVAENGFICNMMNA 364
            |..||         :|.::.|:..:  .:||.....:|....:.:..|:..:||..|...|:.||
  Fly   632 EADKG---------SFSRVFDFEANDLSEEEATSRTSPYESRFPINIGITGHVATTGETVNVPNA 687

Human   365 PADEYFTFQKGPVDETG-WVIKNVLSLPIVNKKEDIVGVATFYNRKDGKPFDEHDEYITETLTQF 428
            ..|:.|   ...|||.. :..:::|.:.|.|....|:||....|:.:...|.::||...|....|
  Fly   688 YEDDRF---DASVDENSCFKHRSILCMAIKNSLGQIIGVIQLINKFNELDFTKNDENFVEAFAIF 749

Human   429 LGWSLLNTDTYDKMNKLENRKDIAQEMLMNQTKATPEEIKSILKFQEKLNVDVIDDCEEKQLVAI 493
            .|..:.||..|:|......::.:..|:|.....||.:|...:.:.:                   
  Fly   750 CGMGIHNTHMYEKAIVAMAKQSVTLEVLSYHASATMDEAHRLRRLR------------------- 795

Human   494 LKEDLPDPRSAELYEFRFSDFPLTEHGLIKCGIRLFFEINVVEKFKVPVEVLTRWMYTVRKGYRA 558
                :|......|::|:|.|....:...:|..:|:|.:::.||:|.:..|||.||:.:|:|.||.
  Fly   796 ----VPSAVHFRLHDFKFDDIHFEDDDTLKACLRMFLDLDFVERFHIDYEVLCRWLLSVKKNYRN 856

Human   559 VTYHNWRHGFNVGQTMFTLLMTGRLKKYYTDLEAFAMLAAAFCHDIDHRGTNNLYQMKSTSPLAR 623
            ||||||||.|||.|.||.:|.|.:..|.:.::|..|::....|||:|||||||.:|:|::||||:
  Fly   857 VTYHNWRHAFNVAQMMFAILTTTQWWKIFGEIECLALIIGCLCHDLDHRGTNNSFQIKASSPLAQ 921

Human   624 LHGSSILERHHLEYSKTLLQDESLNIFQNLNKRQFETVIHLFEVAIIATDLALYFKKRTMFQKIV 688
            |:.:|.:|.||.:....:|......|..||:...:..||.:.|.||::||||:|||||..|.:.|
  Fly   922 LYSTSTMEHHHFDQCLMILNSPGNQILANLSSDDYCRVIRVLEDAILSTDLAVYFKKRGPFLESV 986

Human   689 DACEQMQTEEEAIKYVTVDPTKKEIIMAMMMTACDLSAITKPWEVQSQVALMVANEFWEQGDLER 753
                    .:....:|..:|  :.::.||.||.|||||||||||::.:||.:|::||:||||:|:
  Fly   987 --------SQPTSYWVAEEP--RALLRAMSMTVCDLSAITKPWEIEKRVADLVSSEFFEQGDMEK 1041

Human   754 TVLQQQPIPMMDRNKRDELPKLQVGFIDFVCTFVYKEFSRFHKEITPMLSGLQNNRVEWKSLADE 818
            ..|...||.:|:|.|.||||.:||.|||.:|..:|:.|:....::.|::.|:::||..|..|||.
  Fly  1042 QELNITPIDIMNREKEDELPMMQVNFIDSICLPIYEAFATLSDKLEPLVEGVRDNRGHWIDLADV 1106

Human   819 YDAKMKVIEEEAKKQE------GGAEKAAEDSGGGDD 849
            ...|....:|..::|:      .|..||..|    ||
  Fly  1107 VKTKTSQDQEPEEEQQQQNVISNGDCKAMSD----DD 1139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PDE6CNP_006195.3 GAF 80..231 CDD:214500 58/156 (37%)
GAF 256..443 CDD:214500 44/189 (23%)
PDEase_I 561..806 CDD:278654 105/244 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 830..858 7/26 (27%)
Pde11NP_001286044.1 GAF 420..582 CDD:214500 58/164 (35%)
GAF 611..762 CDD:214500 42/180 (23%)
PDEase_I 859..1094 CDD:278654 105/244 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165154138
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3689
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D904682at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.750

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