DRSC/TRiP Functional Genomics Resources

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Protein Alignment YTHDF2 and Ythdc1

DIOPT Version :10

Sequence 1:NP_057342.2 Gene:YTHDF2 / 51441 HGNCID:31675 Length:579 Species:Homo sapiens
Sequence 2:NP_647811.2 Gene:Ythdc1 / 38420 FlyBaseID:FBgn0027616 Length:721 Species:Drosophila melanogaster


Alignment Length:377 Identity:87/377 - (23%)
Similarity:153/377 - (40%) Gaps:63/377 - (16%)


- Green bases have known domain annotations that are detailed below.


Human   215 SITSNIVASNSLPPATIAPPKPASWADIASKPAKQ--QPKLKTKNGIAG----SSLPPPP----- 268
            ||:|...|::||..::....|         |||||  ||.::||:..:.    :...|.|     
  Fly    61 SISSVSTATSSLAGSSKRKTK---------KPAKQSPQPAVETKSSKSSAKNKAKREPTPEELNG 116

Human   269 --IKHNMDIGTWDNKGPVAKAPSQALVQNIGQPTQGSPQPVGQQANNS-PPVAQASVGQQTQPLP 330
              .|...|.||  .|...::|..:...::   |.....||..:::... |..|..|.|.::....
  Fly   117 GKKKKRTDSGT--KKTTSSEASDKVKSKS---PDTEDRQPSAKKSRTKIPSNANDSAGHKSDLSE 176

Human   331 PPPPQPAQLSVQQQAAQPTRWVAPRNRGSGFGHNGVDGNGVGQSQAGSGSTPSEPHPVLEKLRSI 395
            ....:|:..:::..:..     :..:.|:....||.:|.|.|:.:..|.|:..|...|   ....
  Fly   177 AEDEKPSLPTLESDSES-----SDSDSGTQHKRNGGNGGGNGRGKPSSKSSTPEKDSV---GGGT 233

Human   396 NNYNPKDFDWNLK------HGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGP 454
            ::::.|.:|:..|      ..|.|:|||.:.|::..|...::|.:....:..|:.|::....   
  Fly   234 HSHSQKGYDYMTKLNYLFRDTRFFLIKSNNSDNVQLSKNKSVWATLPQNDANLNQAFKEARN--- 295

Human   455 VYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHI 513
            |.|:||||.||.|.|.|.|.:....:.....|      |.....|..::.||..|::..:...|:
  Fly   296 VLLIFSVNESGKFAGFARMAAPSRRDIPQVAWVLPPSISPKALGGVIELDWICRKELSFNATLHL 360

Human   514 RLENNENKPVTNSRDTQEV------------PLEKAKQVLKIIASYKHTTSI 553
            ....||.|||...||.||:            |.::..::..|:...|.|..:
  Fly   361 HNTWNEGKPVKIGRDGQEIEPKIGGELCRLFPEDEQIELTPILKKSKETARV 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YTHDF2NP_057342.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..45
Localization to mRNA processing bodies (P-bodies). /evidence=ECO:0000269|PubMed:24284625 2..384 40/182 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 247..387 32/153 (21%)
Interaction with m6A-containing mRNAs. /evidence=ECO:0000269|PubMed:24284625 385..579 46/193 (24%)
YTH 411..544 CDD:461195 39/150 (26%)
Ythdc1NP_647811.2 YTH 255..391 CDD:410979 38/138 (28%)
Blue background indicates that the domain is not in the aligned region.

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