DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HERC5 and Herc4

DIOPT Version :10

Sequence 1:NP_057407.2 Gene:HERC5 / 51191 HGNCID:24368 Length:1024 Species:Homo sapiens
Sequence 2:NP_084390.1 Gene:Herc4 / 67345 MGIID:1914595 Length:1057 Species:Mus musculus


Alignment Length:1031 Identity:365/1031 - (35%)
Similarity:568/1031 - (55%) Gaps:93/1031 - (9%)


- Green bases have known domain annotations that are detailed below.


Human    70 GAGVQVHQLLAGSGGARTPKCIKLG-----KNMK------------IHSVDQGAEHMLILSSDGK 117
            |.|::....:...|...|..|..||     |:.|            |.:|..|..|.|.|:..|:
Mouse    40 GCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKSRKKPEQVVALDAQNIVAVACGEAHTLALNDKGQ 104

Human   118 PFEYDNYSMKHLRFE------------SILQEKKIIQITCGDYHSLALSKGGELFAWGQNLHGQL 170
            .:.:...|...|..:            ..|.:.:|:|:.||.||||||||..|:|.||||.:|||
Mouse   105 VYAWGLDSDGQLGLQGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQL 169

Human   171 GVGRKFPSTTTPQIVEHLAGVPLAQISAGEAHSMALSMSGNIYSWGKNECGQLGLGHTESKDDPS 235
            |:|......|:||:::.|.|:|..|::||.|||..|::||.|:.||:|:.|||||.....:..|:
Mouse   170 GLGIDCQKQTSPQLIKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPN 234

Human   236 LIEGLDNQKVEFVACGGSHSALLTQDGLLFTFGAGKHGQLGHNSTQNELRPCLVAELVGYRVTQI 300
            |::.|.:||:.::.||..|:|.||::|.:||||||.:||||||||.:|:.|..|.||:|..|||:
Mouse   235 LLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTQV 299

Human   301 ACGRWHTLAYVSDLGKVFSFGSGKDGQLGNGGTRDQLMPLPVKVS-------SSEELKLESHTSE 358
            ||||.||.|:|...|:::|||.|.:||||.|.|.::..|..||.:       ..:::..|.:...
Mouse   300 ACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWFSYNGQCPQDIGSEDYFCV 364

Human   359 KELIMIAGGNQSILLWIKKEN-------SYVNLKRTIPTLNEGTVKRWIADVETKRWQSTKREIQ 416
            |.:  .:||:||...:...:|       ...:..:.|.|:||..:::|::....:.......||.
Mouse   365 KRI--FSGGDQSFSHYSSPQNCGPPDDFRCSDPSKQIWTVNEALIQKWLSYPSGRFPVEIANEID 427

Human   417 EIFSSPACLTGSFL------RKRRTTEMMPVYLDLNKARNIFKELTQKD--WITNMITTCLKDNL 473
            ..|||..||.||||      ..|..|....|  |:|.||.:|.:|.|.|  .|:..:...|:.||
Mouse   428 GTFSSSGCLNGSFLAISNDDHYRTGTRFSGV--DMNAARLLFHKLIQPDHPQISQQVAASLEKNL 490

Human   474 LKRLPFHSPPQEALEIFFLLPECPMMHISNNWESLVVPFAKVVCKMSDQSSLVLEEYWATLQEST 538
            :.:|....|..|||..:..|||||:|...||:.::.:||...:..:......|||.:|:.|:...
Mouse   491 IPKLTSSLPDVEALRFYLTLPECPLMSDCNNFTTIAIPFGTALVNLEKAPLKVLENWWSVLEPPL 555

Human   539 FSKLVQMFKTAVICQLDYW------DESAEENGNVQALLEMLKKLHRVNQVKCQLPESIFQVDEL 597
            |.|:|::||..|:..|..:      .|....|..:...|::|:.|||||:...||    .|.|:.
Mouse   556 FLKIVELFKEVVVHLLKLYKIGIPPSERRIFNSFLHTALKVLEILHRVNEKTGQL----IQYDKF 616

Human   598 -LHRLNFFVEVCRRYL-WKMT----VDASENV----QCCVIFSHFPFIFNNLSKIKLLHTDTLLK 652
             :|.:...:::...|: |...    ||.|..|    ...|....:||:|:..:|..||.||.:|:
Mouse   617 YIHEVQELIDIRNDYINWVQQQAYGVDVSHGVTELADIPVTICTYPFVFDAQAKTTLLQTDAVLQ 681

Human   653 IESKKHKAYLRSAA------IEEERESEFALRPTFDLTVRRNHLIEDVLNQLSQFENEDLRKELW 711
            ::....:|:.::.:      ||       ::.|...|.|||.:::.|.:..|.:.:|.|.:|.|.
Mouse   682 MQMAIDQAHRQNVSSLFLPVIE-------SVNPCLILVVRRENIVGDAMEVLRKTKNIDYKKPLK 739

Human   712 VSFSGEIGYDLGGVKKEFFYCLFAEMIQPEYGMFMYPEGASCMWFPVKPKFEKKRYFFFGVLCGL 776
            |.|.||...|.|||:||||..:..|::.|:||||.|.|.:..:||..|...:...:...||:|||
Mouse   740 VIFVGEDAVDAGGVRKEFFLLIMRELLDPKYGMFRYYEDSRLIWFSDKTFEDSDLFHLIGVICGL 804

Human   777 SLFNCNVANLPFPLALFKKLLDQMPSLEDLKELSPDLGKNLQTLLDDEGDNFEEVFYIHFNVHWD 841
            :::|..:.:|.|||||:||||.:.|||:|||||.|.:|:::|.|||...|:.||.|.::|.:..:
Mouse   805 AIYNFTIVDLHFPLALYKKLLKRKPSLDDLKELMPAVGRSMQQLLDYPEDDIEETFCLNFTITVE 869

Human   842 R----NDTNLIPNGSSITVNQTNKRDYVSKYINYIFNDSVKAVYEEFRRGFYKMCDEDIIKLFHP 902
            .    ....|:.||:...||:.|::::|..|::||||.||.::::.|..||:|:|...::.||.|
Mouse   870 NFGATEVKELVLNGADTAVNRQNRQEFVDAYVDYIFNKSVASLFDAFHAGFHKVCGGKVLLLFQP 934

Human   903 EELKDVIVGNTDYDWKTFEKNARYEPGYNSSHPTIVMFWKAFHKLTLEEKKKFLVFLTGTDRLQM 967
            .||:.:::|||:||||..|||..|:..|.:.||||.:||:.||:|.||:||:||:||||:||:.:
Mouse   935 NELQAMVIGNTNYDWKELEKNTEYKGEYWADHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPI 999

Human   968 KDLNNMKITFCCPESWNERDPIRALTCFSVLFLPKYSTMETVEEALQEAINNNRGF 1023
            ..:.::|:............|: :.|||::|.||||:..||:...|.:||::|.||
Mouse  1000 LGMKSLKLVIQSTGGGESYLPV-SHTCFNLLDLPKYTEKETLRCKLIQAIDHNEGF 1054

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HERC5NP_057407.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28
RCC1 1 96..155 21/82 (26%)
ATS1 <140..346 CDD:444065 104/212 (49%)
RCC1 2 156..208 24/51 (47%)
RCC1 3 209..260 21/50 (42%)
RCC1 4 262..312 31/49 (63%)
RCC1 5 314..364 16/56 (29%)
HECTc 681..1024 CDD:238033 143/347 (41%)
Herc4NP_084390.1 RCC1 1 1..51 2/10 (20%)
ATS1 3..338 CDD:444065 120/297 (40%)
RCC1 2 52..101 13/48 (27%)
RCC1 3 102..154 14/51 (27%)
RCC1 4 156..207 24/50 (48%)
RCC1 5 208..259 21/50 (42%)
RCC1 6 261..311 31/49 (63%)
RCC1 7 313..366 15/52 (29%)
HECTc 709..1055 CDD:238033 143/347 (41%)
Blue background indicates that the domain is not in the aligned region.

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