DRSC/TRiP Functional Genomics Resources

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Protein Alignment CHMP1A and CHMP2B

DIOPT Version :9

Sequence 1:XP_011521400.1 Gene:CHMP1A / 5119 HGNCID:8740 Length:408 Species:Homo sapiens
Sequence 2:NP_647947.1 Gene:CHMP2B / 38599 FlyBaseID:FBgn0035589 Length:212 Species:Drosophila melanogaster


Alignment Length:31 Identity:10/31 - (32%)
Similarity:15/31 - (48%) Gaps:4/31 - (12%)


- Green bases have known domain annotations that are detailed below.


Human    43 RERHPQEERRCELASDGVPRRRSGLQGADSC 73
            |.:..:|||:.||..    ||.:.....|:|
  Fly    34 RRKMEEEERKLELEI----RRNAAAGNNDAC 60

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHMP1AXP_011521400.1 PHA03269 90..>197 CDD:165527
PHA03269 153..>267 CDD:165527
PHA03269 249..>365 CDD:165527
CHMP2BNP_647947.1 Snf7 18..186 CDD:281366 10/31 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5491
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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