DRSC/TRiP Functional Genomics Resources

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Protein Alignment SDF4 and scf

DIOPT Version :10

Sequence 1:XP_047278067.1 Gene:SDF4 / 51150 HGNCID:24188 Length:362 Species:Homo sapiens
Sequence 2:NP_477392.1 Gene:scf / 38145 FlyBaseID:FBgn0025682 Length:329 Species:Drosophila melanogaster


Alignment Length:351 Identity:102/351 - (29%)
Similarity:168/351 - (47%) Gaps:42/351 - (11%)


- Green bases have known domain annotations that are detailed below.


Human    25 LLGAVLLMDASARPANHSSTRERVA-NREENEILPPDHLNGVKLEMDGHLNRGFHQEVFLGKDLG 88
            :|..|:.:.|....|:.||..|.:. |..|::.|.|.|.:|      |..|..|..|.|||.|..
  Fly     8 MLLLVVALTAVISGASASSIPEELPHNPLEHDPLHPRHFDG------GEHNAQFDHEAFLGPDES 66

Human    89 GFDEDAEPRRSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEES-KTHFRAVDPD 152
            ...:...|..|||:|.||..::|.|.|..::..|::.||......:.:|.:... |.|    :||
  Fly    67 KKFDSLTPEESRRRLGVIVDRIDENKDGSVTLAELKNWIAYTQRRYIEEDVGRVWKQH----NPD 127

Human   153 GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELKVDEETQE--------VLENLKDRWYQADS 209
            .:..:|||.|              :.......::|..||:.||        :|:..:.||..||.
  Fly   128 NNETISWDSY--------------MQTVYGFMDDLSPDEKEQEENGVSYKSLLKRDRYRWSVADQ 178

Human   210 PPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQG-QD 273
             ..|..||::||.:|||||....|...:::|.:.|||:|.|.::||.|:|    |.:....| :|
  Fly   179 -DLDDNLTKDEFTAFLHPEDHPSMKGVVLRETITDLDKDHDGKISVDEYI----GDMYRSTGAED 238

Human   274 IDDNWVKDRKKEFEELIDSNHDGIVTAEELESYMDPMNEYNALNEAKQMIAVADENQNHHLEPEE 338
            .:..||.:.::.|....|.:.||.:..||::.::.|.:..::..|||.::..||.:.:..|..||
  Fly   239 EEPEWVANEREAFSTHRDLDKDGYLNEEEVKQWIAPHDFDHSEAEAKHLLFEADADHDDKLTKEE 303

Human   339 VLKYSEFFTGSKLVDYARSV--HEEF 362
            :|...:.|.||:..|:..::  |:||
  Fly   304 ILDKYDVFVGSQATDFGEALARHDEF 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SDF4XP_047278067.1 EFh_CREC_cab45 67..347 CDD:320023 82/289 (28%)
EF-hand motif 67..95 CDD:320023 8/27 (30%)
EF-hand motif 102..131 CDD:320023 9/28 (32%)
EF-hand motif 141..170 CDD:320023 8/29 (28%)
EF-hand motif 199..229 CDD:320023 13/29 (45%)
EF-hand motif 237..266 CDD:320023 11/28 (39%)
EF-hand motif 282..311 CDD:320023 7/28 (25%)
EF-hand motif 318..347 CDD:320023 9/28 (32%)
scfNP_477392.1 EFh_CREC_Calumenin_like 45..313 CDD:320024 85/296 (29%)
EF-hand motif 45..74 CDD:320024 10/34 (29%)
EF-hand motif 80..109 CDD:320024 9/28 (32%)
EF-hand motif 116..145 CDD:320024 8/46 (17%)
EF-hand motif 168..197 CDD:320024 13/29 (45%)
EF-hand motif 205..234 CDD:320024 11/32 (34%)
EF-hand motif 247..276 CDD:320024 7/28 (25%)
EF-hand motif 283..313 CDD:320024 10/29 (34%)

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