DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CHCHD2 and Chchd2l3

DIOPT Version :10

Sequence 1:NP_001307256.1 Gene:CHCHD2 / 51142 HGNCID:21645 Length:168 Species:Homo sapiens
Sequence 2:NP_001015019.2 Gene:Chchd2l3 / 316643 RGDID:1309819 Length:154 Species:Rattus norvegicus


Alignment Length:155 Identity:131/155 - (84%)
Similarity:136/155 - (87%) Gaps:5/155 - (3%)


- Green bases have known domain annotations that are detailed below.


Human     1 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPA-AAPPSAVGSSAAAPRQPGLMAQMATTAA 64
            |||.|||||||:.||||||||||||||.||.||||| ||.||||||.||||||||||||||||||
  Rat     1 MPRDSRSRTSRVTPPASRAPQMRAAPRRAPAAQPPATAAAPSAVGSPAAAPRQPGLMAQMATTAA 65

Human    65 GVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQ---PCLYEIKQFLECAQ 126
            |||||||||||||||||||||||:||||||||||||||||. |.|.|.   ||..||||||||||
  Rat    66 GVAVGSAVGHTLGHAITGGFSGGANAEPARPDITYQEPQGA-PLQNQHSFGPCSLEIKQFLECAQ 129

Human   127 NQGDIKLCEGFNEVLKQCRLANGRI 151
            ||.|:||||||||||:|||:|||.|
  Rat   130 NQSDVKLCEGFNEVLRQCRIANGLI 154

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CHCHD2NP_001307256.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50 41/49 (84%)
COG3416 <4..>93 CDD:442642 80/89 (90%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 77..111 29/33 (88%)
Cx9C motif 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU01150 114..124 7/9 (78%)
Cx9C motif 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU01150 134..144 8/9 (89%)
Chchd2l3NP_001015019.2 COG3416 <5..>94 CDD:442642 80/88 (91%)

Return to query results.
Submit another query.