DRSC/TRiP Functional Genomics Resources

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Protein Alignment YBX2 and CNBP

DIOPT Version :10

Sequence 1:XP_016880202.1 Gene:YBX2 / 51087 HGNCID:17948 Length:379 Species:Homo sapiens
Sequence 2:NP_611739.1 Gene:CNBP / 37646 FlyBaseID:FBgn0034802 Length:165 Species:Drosophila melanogaster


Alignment Length:155 Identity:34/155 - (21%)
Similarity:46/155 - (29%) Gaps:58/155 - (37%)


- Green bases have known domain annotations that are detailed below.


Human    40 GGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVS--GTPAPPARSQADKPVLAIQVLGTVKWFN 102
            |||.|||||...|...|     |.|.........:  |..|.....:|::....           
  Fly    32 GGGGGGGGGGMRGNDGG-----GMRRNREKCYKCNQFGHFARACPEEAERCYRC----------- 80

Human   103 VRNGYGFINRNDTKEDVFVHQLENHCLVERALTGTETAIKRNNPRKFLRSVGDGETVEFDVVEGE 167
              ||.|.|:::.|:.|                  ..|..:.|....::|:.              
  Fly    81 --NGIGHISKDCTQAD------------------NPTCYRCNKTGHWVRNC-------------- 111

Human   168 KGAEATNVTGPGGVPVKGSRYAPNR 192
              .||.|..||..|    |.|..||
  Fly   112 --PEAVNERGPTNV----SCYKCNR 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
YBX2XP_016880202.1 CSD 94..178 CDD:278729 12/83 (14%)
PRK12323 <319..>367 CDD:481241
CNBPNP_611739.1 PTZ00368 6..161 CDD:173561 34/155 (22%)
Blue background indicates that the domain is not in the aligned region.

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