DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCDH9 and Cad96Cb

DIOPT Version :10

Sequence 1:NP_982354.1 Gene:PCDH9 / 5101 HGNCID:8661 Length:1237 Species:Homo sapiens
Sequence 2:NP_001287524.1 Gene:Cad96Cb / 43033 FlyBaseID:FBgn0039294 Length:789 Species:Drosophila melanogaster


Alignment Length:574 Identity:139/574 - (24%)
Similarity:240/574 - (41%) Gaps:110/574 - (19%)


- Green bases have known domain annotations that are detailed below.


Human    36 ENVPIGNIPKDLNIS-HINAATGTSASLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCA 99
            |::.:|:|...|.|: ..||.||.     ..|..:..:|| |::...|.|: ..|..:|:|.:..
  Fly    46 EDLAVGSIIGKLRINGDANAETGD-----INLSLREKNAP-VEIHPGTKEL-ALSVELDKEGVRG 103

Human   100 GASYAEENECFFELEVVIL---PNDFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRF 161
            .:|        ..:.|:.:   ..|...:|.:.:.|.|.|||||.:......:::.|.|:..:|.
  Fly   104 PSS--------IYVNVICIRRHSTDPSFVIPVNVRVTDVNDNAPQWIGTPYTLTLSEVTVPGTRI 160

Human   162 PIPSATDPDTG----FNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKI 222
             :..|...|..    |:.|: |::|.|.....:..:...||    .|::::.||.||...:.:|:
  Fly   161 -LQGARAEDADQPGPFSTVE-YQVLPGPYSEYVQFLNPLEG----TLVLKKALDYEQLQNFTVKL 219

Human   223 KVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQ---LHATDADIGSN 284
            :.:|.|||.:.|..:|:|.::|.:|..|.|:.......||.:...|...::   |.|.|.|.|..
  Fly   220 RAQDQGTPPRHSDTLLRVVITDADDQNPKFQRESYSAEIPADGRPGELRMRPEPLKAVDQDEGIC 284

Human   285 AEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIH----KVTVLASDGSSTPAR-ATV 344
            |.|:|                       |:.:|.|.:...||    .:::|...|.:..|. ||:
  Fly   285 APIQY-----------------------TIVQSQDAKYFRIHPHNGAISLLTPIGYADVANGATL 326

Human   345 TINVTDVNDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDK-------DTDVNGKVICF 402
            .:..|.: |||.    ||.::    ||.|:.....:....|..|..:       ||.|..:::..
  Fly   327 VVKATQI-DNPD----RYALT----TVQLTRPGSHSDLSTLAFVQKRFVMRIREDTAVGNRILAL 382

Human   403 IEREVPFHLKAVYD---NQYLLETSSL--------LDYEGTKEFSFKIVASDSGKPSLNQTALVR 456
            ...:...|||.|..   |.......||        ||||...:..|:::|:|.   ..|.||.:.
  Fly   383 PTNKPGKHLKYVIPDPVNSQFFSVGSLGELVLAKPLDYEKMTKHEFQVLATDG---MTNSTAELT 444

Human   457 VKLEDENDNPPIFNQPVIELSVSENNRR-------GLYLTTISATDEDSGKNADIVYQLGPNASF 514
            :::.|.||..|.|.:...|..|.:::.:       |:.:..:.|.|.|.....::..: |.:|..
  Fly   445 LEVIDVNDWEPRFRETHYEFMVPKSSLQSRADSFEGVLIGKVEAADGDRNDKLELSLR-GQHAGL 508

Human   515 FDLDRKTGVLTASRVFDREEQERFIFTVT------ARDNGTPPLQSQAAVIVTV 562
            |::| .||     .::.|.||.:.:...|      |.|.|.||..:...|.||:
  Fly   509 FEID-STG-----NIYMRPEQLQSLNESTVHLIAIATDTGVPPRSTSVPVSVTM 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCDH9NP_982354.1 Cadherin_repeat 29..138 CDD:206637 25/105 (24%)
Cadherin_repeat 146..248 CDD:206637 26/105 (25%)
Cadherin_repeat 258..354 CDD:206637 22/103 (21%)
Cadherin_repeat 370..465 CDD:206637 27/112 (24%)
Cadherin_repeat 473..568 CDD:206637 24/103 (23%)
Cadherin_repeat 576..671 CDD:206637
Cadherin_repeat 687..776 CDD:206637
Protocadherin 777..1000 CDD:462451
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 849..882
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 984..1035
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1055..1084
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1097..1122
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1186..1237
Cad96CbNP_001287524.1 CA_like <80..139 CDD:481204 16/68 (24%)
Cadherin_repeat 145..244 CDD:206637 26/104 (25%)
Cadherin_repeat 253..347 CDD:206637 29/125 (23%)
Cadherin_repeat 365..452 CDD:206637 21/89 (24%)
Cadherin_repeat 461..555 CDD:206637 22/100 (22%)
Blue background indicates that the domain is not in the aligned region.

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