DRSC/TRiP Functional Genomics Resources

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Protein Alignment TMED5 and CHOp24

DIOPT Version :10

Sequence 1:NP_057124.3 Gene:TMED5 / 50999 HGNCID:24251 Length:229 Species:Homo sapiens
Sequence 2:NP_572165.1 Gene:CHOp24 / 31382 FlyBaseID:FBgn0029709 Length:208 Species:Drosophila melanogaster


Alignment Length:220 Identity:59/220 - (26%)
Similarity:105/220 - (47%) Gaps:26/220 - (11%)


- Green bases have known domain annotations that are detailed below.


Human    11 VLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFH 75
            ||||.....:|...:..|..|:|        |..:|||::.:.......:.::|:||..||:|..
  Fly     8 VLLLVGSLLILCRTSHAFIVSVD--------AHNEECFFENVEGGTKFGVTFEVIDGGFLDVDIK 64

Human    76 LASPEGKTLVFEQRKSDGVHT-VETEVGDYMFCFDNTFSTISEKVIFFELILDNMGEQAQ----E 135
            ::.|:...:...:::|.|.:| |....|.|..||:|..|:::.|::.|.:.:.:..::|.    |
  Fly    65 ISGPDNHVMHESEKESSGKYTFVAPAKGTYTVCFNNERSSMTPKLVMFSIDVGDAPQRAPGAPGE 129

Human   136 QEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSM 200
            :|          :...||||:   |..:...|:...|.|..:...:...|::.|:...||..||.
  Fly   130 EE----------VGHTKLEDM---IRELSGTLTSVKHEQEYMHVRDKIHRSVNENTNSRVVLWST 181

Human   201 VNLVVMVVVSAIQVYMLKSLFEDKR 225
            ...:|:|:::..|||.||..||.||
  Fly   182 FEALVLVLMTVGQVYYLKRFFEVKR 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMED5NP_057124.3 EMP24_GP25L 35..222 CDD:426051 47/191 (25%)
CHOp24NP_572165.1 EMP24_GP25L 24..203 CDD:426051 50/199 (25%)

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