DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCDH1 and Cad96Cb

DIOPT Version :10

Sequence 1:XP_005268509.2 Gene:PCDH1 / 5097 HGNCID:8655 Length:1253 Species:Homo sapiens
Sequence 2:NP_001287524.1 Gene:Cad96Cb / 43033 FlyBaseID:FBgn0039294 Length:789 Species:Drosophila melanogaster


Alignment Length:889 Identity:201/889 - (22%)
Similarity:326/889 - (36%) Gaps:304/889 - (34%)


- Green bases have known domain annotations that are detailed below.


Human   115 LRVDG----KTGDI-------------------FTTETSIDREGLRE---------CQNQLPGDP 147
            ||::|    :||||                   ......:|:||:|.         |..:...||
  Fly    57 LRINGDANAETGDINLSLREKNAPVEIHPGTKELALSVELDKEGVRGPSSIYVNVICIRRHSTDP 121

Human   148 CILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGS-LFPIPLASDR 211
               .|.:.:              .:.|.|:|||.|.:.....||.:.|.|..|: :.....|.|.
  Fly   122 ---SFVIPV--------------NVRVTDVNDNAPQWIGTPYTLTLSEVTVPGTRILQGARAEDA 169

Human   212 D-AGPNGVASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPP 275
            | .||.....|::..||.::.:..|...|.      .|::...||.|:..::.:.::.||.|:||
  Fly   170 DQPGPFSTVEYQVLPGPYSEYVQFLNPLEG------TLVLKKALDYEQLQNFTVKLRAQDQGTPP 228

Human   276 RASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVIQ---VKANDSDQGANAEIEYTFHQ 337
            |.|..||||.:.|.:|..|||:|.||.||:..:...|...::   :||.|.|:|..|.|:||..|
  Fly   229 RHSDTLLRVVITDADDQNPKFQRESYSAEIPADGRPGELRMRPEPLKAVDQDEGICAPIQYTIVQ 293

Human   338 APEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDNAPT 402
            :.:.  :..|:..:.|.|::..|:                                         
  Fly   294 SQDA--KYFRIHPHNGAISLLTPI----------------------------------------- 315

Human   403 IEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSD 467
                         |.|:::..     |..:|:.:..|..:..|:|.|          |.:..||.
  Fly   316 -------------GYADVANG-----ATLVVKATQIDNPDRYALTTV----------QLTRPGSH 352

Human   468 S--------KKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQ 524
            |        :|::.:         ::::.|    ||  ||..|                      
  Fly   353 SDLSTLAFVQKRFVM---------RIREDT----AV--GNRIL---------------------- 380

Human   525 SVTEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGEIQVKTSLDRE 589
                 |.| .||||:                .|.|.: |:|.....|::. ..||:.:...||.|
  Fly   381 -----ALP-TNKPGK----------------HLKYVI-PDPVNSQFFSVG-SLGELVLAKPLDYE 421

Human   590 QRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMENMPALSP-------- 646
            :...:|.:|:|.|..:.|   ||.:.:.|:|.||.:|:|..:.|.|.|.::  :|..        
  Fly   422 KMTKHEFQVLATDGMTNS---TAELTLEVIDVNDWEPRFRETHYEFMVPKS--SLQSRADSFEGV 481

Human   647 -VGMVTVIDGDKGENAQVQLSVE-QDNGDFVIQNGTGTI------LSSLSFDREQQSTYTFQLKA 703
             :|.|...|||:  |.:::||:. |..|.|.| :.||.|      |.||:     :||......|
  Fly   482 LIGKVEAADGDR--NDKLELSLRGQHAGLFEI-DSTGNIYMRPEQLQSLN-----ESTVHLIAIA 538

Human   704 VDGGVPPRSAYVGVTINVLDENDNAPYITAPSNTSHKLLTPQTRLGETVSQVAAEDFDSGVNAEL 768
            .|.||||||..|.|::                          |..|.|:::       ||.|:.:
  Fly   539 TDTGVPPRSTSVPVSV--------------------------TMEGLTLAR-------SGWNSNM 570

Human   769 IYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPRYGTAL----VHLYVN 829
            :...  |...|||.:      |.:         .|...:|:...:||....|..|    ||...:
  Fly   571 LGMF--GMIMGLFLM------IIV---------ALSCYIVRSKKQGKSASSGLGLGRNRVHSQAH 618

Human   830 ETLANRTLL--ETLLGHSLDTPLDIDIAGDPEYERSKQRGNI---------LFGVVAGVVAVALL 883
            .::::..|:  |.|.|:.......: .:|.......|..|||         |..|.:|..:...|
  Fly   619 SSVSSANLVTHEKLAGNGNGNGASV-TSGGVSVLHMKHGGNITMANPMNNGLHHVASGASSSMAL 682

Human   884 IALAVLVRYCRQRE-----AKSGYQAGKKETKDLYAPKPSGKAS 922
            .:.|.|:...|:||     .:..|.|    |..::.|....:||
  Fly   683 GSSAALLERERERERDRERQRESYAA----TVRIFLPGIVSRAS 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCDH1XP_005268509.2 Cadherin_2 76..154 CDD:462413 15/70 (21%)
Cadherin_repeat 188..292 CDD:206637 31/105 (30%)
Cadherin_repeat 300..399 CDD:206637 19/101 (19%)
Cadherin_repeat 418..518 CDD:206637 18/107 (17%)
Cadherin_repeat 528..624 CDD:206637 26/95 (27%)
Cadherin_repeat 633..727 CDD:206637 34/109 (31%)
Cadherin_repeat 746..828 CDD:206637 19/85 (22%)
Protocadherin 831..1045 CDD:462451 24/108 (22%)
Cad96CbNP_001287524.1 CA_like <80..139 CDD:481204 13/75 (17%)
Cadherin_repeat 145..244 CDD:206637 31/104 (30%)
Cadherin_repeat 253..347 CDD:206637 28/164 (17%)
Cadherin_repeat 365..452 CDD:206637 31/150 (21%)
Cadherin_repeat 461..555 CDD:206637 34/129 (26%)

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