DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SHANK1 and FLO11

DIOPT Version :9

Sequence 1:XP_011525315.1 Gene:SHANK1 / 50944 HGNCID:15474 Length:2169 Species:Homo sapiens
Sequence 2:NP_012284.3 Gene:FLO11 / 854836 SGDID:S000001458 Length:1367 Species:Saccharomyces cerevisiae


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SHANK1XP_011525315.1 FERM_f0 73..156 CDD:293120
ANK 186..301 CDD:238125
Ank_2 187..277 CDD:289560
ANK repeat 212..244 CDD:293786
ANK repeat 246..277 CDD:293786
ANK 274..399 CDD:238125
ANK repeat 279..344 CDD:293786
Ank_2 285..377 CDD:289560
ANK repeat 346..377 CDD:293786
SH3 557..608 CDD:302595
PDZ_signaling 661..754 CDD:238492
SAM_Shank1,2,3 2102..2167 CDD:188905
SAM 2105..2169 CDD:197735
FLO11NP_012284.3 Flo11 43..193 CDD:401990
Herpes_BLLF1 <1071..>1322 CDD:282904
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.