DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCBP2 and ps

DIOPT Version :10

Sequence 1:NP_005007.2 Gene:PCBP2 / 5094 HGNCID:8648 Length:366 Species:Homo sapiens
Sequence 2:NP_001262415.1 Gene:ps / 44258 FlyBaseID:FBgn0261552 Length:780 Species:Drosophila melanogaster


Alignment Length:164 Identity:32/164 - (19%)
Similarity:57/164 - (34%) Gaps:53/164 - (32%)


- Green bases have known domain annotations that are detailed below.


Human  1115 PVIHRAMQGGLVGSNETVALTAFVVIALHHGLNV---FREGHAKQLKN----------------- 1159
            |:|...::|.:|.::..  .|.:::.......|:   |.:.|..:|.|                 
  Fly    17 PIIADGLRGFVVATHRN--WTKYIIKTNGRNSNIVNFFDKAHISKLGNPKWWVRFDRPHGNVNFN 79

Human  1160 --RVEASIT-------KANSFLGQKASAGLLG-----------AHAAA---ITAYALTLTKASED 1201
              .:..:||       |.|....|  ..|:||           |.|||   ..||.::.....:.
  Fly    80 HININKAITGVTDPHIKINPITAQ--IFGILGKVAEKTNQIAPAFAAATLLFEAYQISKEVKKDI 142

Human  1202 LRNVAHNSLMAMAEETGE------NLYWGLVLGS 1229
            ..|...|::..:|.:.||      :.|.|..:|:
  Fly   143 DHNTTRNTVEVLATKVGEYSAGSASAYAGSAIGT 176

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBP2NP_005007.2 KH-I_PCBP1_2_rpt1 13..82 CDD:411943
KH-I_PCBP1_2_rpt2 92..169 CDD:411946
KH-I_PCBP1_2_rpt3 285..360 CDD:411949
psNP_001262415.1 KH-I_NOVA_rpt1 274..345 CDD:411863
KH-I_NOVA_rpt2 367..436 CDD:411864
KH-I_NOVA_rpt3 694..762 CDD:411807
Blue background indicates that the domain is not in the aligned region.

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