DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCBP2 and mub

DIOPT Version :9

Sequence 1:NP_005007.2 Gene:PCBP2 / 5094 HGNCID:8648 Length:366 Species:Homo sapiens
Sequence 2:NP_001246875.1 Gene:mub / 40436 FlyBaseID:FBgn0262737 Length:573 Species:Drosophila melanogaster


Alignment Length:410 Identity:179/410 - (43%)
Similarity:234/410 - (57%) Gaps:90/410 - (21%)


- Green bases have known domain annotations that are detailed below.


Human    11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75
            :|||||||:|.|||||||||||||.|.:.||||||:||||:|:|||||:|::|.|||||.||.:|
  Fly    21 SVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDGSCPERIVTVSGTTNAIFSAFTLI 85

Human    76 IDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN 140
            ..|.|| ..|...:.....:..:.:||:||||||||||||.|.||||||::||..:|||.:||||
  Fly    86 TKKFEE-WCSQFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPN 149

Human   141 STERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPYRPKPS-SSPVIFAGGQDRYSTGS 204
            |||||:|::|..:.|.:|:.|||:||||    |||:|.||||||||. :.|||.|.||       
  Fly   150 STERAVTLSGSAEQITQCIYQICLVMLE----SPPRGATIPYRPKPQVTGPVILANGQ------- 203

Human   205 DSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQ----------------- 252
                                    |:||||.||:|..:...:..||:.                 
  Fly   204 ------------------------AFTIQGNYAVPTQETCPVFPLALATGGLHAGISGLADPLLK 244

Human   253 ----QSHFPMTHGN-----------------TGFSGIESSSPEVKGYWAGLDASAQTTSHELTIP 296
                |...|..|.:                 .|.:|:..:|.....:.|.....||...||:|:.
  Fly   245 GAHLQGAIPAHHHHLQQMPDVAKNPLASLAALGLAGMNPASTGGINHTANPANRAQQQQHEMTVS 309

Human   297 NDLIGCIIGRQGAKINEIRQMSGAQIKIANPVE---GSTDRQVTITGSAASISLAQYLINVRL-- 356
            |||||||||:.|.||.||||:|||.|:|:|..|   |:|||.:||:|:..|::|||||||:.:  
  Fly   310 NDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMSVEL 374

Human   357 ----------SSETGGMGSS 366
                      |.:.||..::
  Fly   375 QKANLLEQAQSQQNGGAAAA 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBP2NP_005007.2 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 49/68 (72%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 45/76 (59%)
KH-I_PCBP1_2_rpt3 285..360 CDD:411949 44/89 (49%)
mubNP_001246875.1 PCBP_like_KH 25..86 CDD:239089 44/60 (73%)
PCBP_like_KH 109..172 CDD:239089 40/62 (65%)
KH-I 305..368 CDD:238053 37/62 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 97 1.000 Domainoid score I7245
eggNOG 1 0.900 - - E1_KOG2190
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 328 1.000 Inparanoid score I2465
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52907
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001027
OrthoInspector 1 1.000 - - otm40928
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10288
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1164
SonicParanoid 1 1.000 - - X408
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.960

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