DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCBP2 and Psi

DIOPT Version :10

Sequence 1:NP_005007.2 Gene:PCBP2 / 5094 HGNCID:8648 Length:366 Species:Homo sapiens
Sequence 2:NP_995862.1 Gene:Psi / 36889 FlyBaseID:FBgn0014870 Length:797 Species:Drosophila melanogaster


Alignment Length:413 Identity:93/413 - (22%)
Similarity:168/413 - (40%) Gaps:100/413 - (24%)


- Green bases have known domain annotations that are detailed below.


Human    26 GSIIGK-KGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIID--------KLEE 81
            |:.:|: ..:::..::.|||.::.:.:..  :|:|.|.|..:.:.|...||.:        ::|.
  Fly   134 GAFMGRSSNDTITHIQAESGVKVQVMQDQ--DRVIMLRGQRDTVTKGREMIQNMANRAGGGQVEV 196

Human    82 DISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAI 146
            .::.:|.....:..||.. .:::|.::.|.:|||||..||:::|.|||::.:..|.......:.:
  Fly   197 LLTINMPPPGPSGYPPYQ-EIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPL 260

Human   147 TIAGIPQSIIECVKQICVVMLETLSQSPPKG-----------------------------VTIPY 182
            .|:|..|. ||..||   ::|:.::|...:|                             .|..:
  Fly   261 RISGEAQK-IEHAKQ---MVLDLIAQKDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGESTEVF 321

Human   183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLE----AYTIQG---QYAIPQ 240
            .||.:...||..||.......::..         |....::|...|    ...|||   |....:
  Fly   322 VPKIAVGVVIGKGGDMIRKIQTECG---------CKLQFIQGKNDEMGDRRCVIQGTRQQVDDAK 377

Human   241 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVK-GYWAGLDASAQTTSHELT--IPNDLIGC 302
            ..:..|.:..||::.. ..:||.|..|....|.... ||..|:: .||....|:|  :|....|.
  Fly   378 RTIDGLIENVMQRNGM-NRNGNGGGGGPGGDSGNSNYGYGYGVN-HAQGGREEITFLVPASKCGI 440

Human   303 IIGRQGAKINEIRQMSGAQIKI----ANP-------VEGSTDRQVTITGSAASISLAQYLINVRL 356
            :|||.|..|..|.|.|||..::    :||       .:|:||:          :..|:.:|:.::
  Fly   441 VIGRGGETIKLINQQSGAHTEMDRNASNPPNEKLFKSKGTTDQ----------VEAARQMISEKI 495

Human   357 SSET-------------GGMGSS 366
            :.|.             ||.|:|
  Fly   496 NMELNVISRKPIGGGPGGGGGNS 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBP2NP_005007.2 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 13/64 (20%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 24/76 (32%)
KH-I_PCBP1_2_rpt3 285..360 CDD:411949 23/87 (26%)
PsiNP_995862.1 KH_1 123..184 CDD:459630 12/51 (24%)
KH-I_FUBP_rpt2 214..280 CDD:411825 22/70 (31%)
KH-I_FUBP_rpt3 317..384 CDD:411826 14/75 (19%)
KH-I_FUBP_rpt4 428..494 CDD:411827 21/75 (28%)
DUF1897 591..619 CDD:462653
DUF1897 <653..680 CDD:462653
Blue background indicates that the domain is not in the aligned region.

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