DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCBP1 and Psi

DIOPT Version :10

Sequence 1:NP_006187.2 Gene:PCBP1 / 5093 HGNCID:8647 Length:356 Species:Homo sapiens
Sequence 2:NP_995862.1 Gene:Psi / 36889 FlyBaseID:FBgn0014870 Length:797 Species:Drosophila melanogaster


Alignment Length:377 Identity:88/377 - (23%)
Similarity:157/377 - (41%) Gaps:64/377 - (16%)


- Green bases have known domain annotations that are detailed below.


Human    26 GSIIGK-KGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIID--------KLEE 81
            |:.:|: ..:::..|:.|||.::.:.:..  :|:|.|.|..:.:.|...||.:        ::|.
  Fly   134 GAFMGRSSNDTITHIQAESGVKVQVMQDQ--DRVIMLRGQRDTVTKGREMIQNMANRAGGGQVEV 196

Human    82 DINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAI 146
            .:..:|.....:..||.. .:::|..:.|.:|||||..||:::|.|||::.:..|.......:.:
  Fly   197 LLTINMPPPGPSGYPPYQ-EIMIPGAKVGLVIGKGGDTIKQLQEKTGAKMIIIQDGPNQELIKPL 260

Human   147 TIAGVPQSVTECVKQICLVML---ETLSQSPQGR----------------------VMTIPYQPM 186
            .|:|..|.: |..||:.|.::   :...|...||                      ..|..:.|.
  Fly   261 RISGEAQKI-EHAKQMVLDLIAQKDAQGQQQGGRGGGGGGGGPGMGFNNFNNGNGGESTEVFVPK 324

Human   187 PASSPVICAGG------QDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK------LN 239
            .|...||..||      |..|.....:....:|..|.  ....|||  |...:|.||      :.
  Fly   325 IAVGVVIGKGGDMIRKIQTECGCKLQFIQGKNDEMGD--RRCVIQG--TRQQVDDAKRTIDGLIE 385

Human   240 QVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELT--IPNNLIGCIIGRQGANI 302
            .|.::.......:||.|..|.||.:... ||...::.:.....|:|  :|.:..|.:|||.|..|
  Fly   386 NVMQRNGMNRNGNGGGGGPGGDSGNSNY-GYGYGVNHAQGGREEITFLVPASKCGIVIGRGGETI 449

Human   303 NEIRQMSGAQIKI----ANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 350
            ..|.|.|||..::    :||   .:.:.....|:...:..|:.:|:.:::.|
  Fly   450 KLINQQSGAHTEMDRNASNP---PNEKLFKSKGTTDQVEAARQMISEKINME 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBP1NP_006187.2 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 14/64 (22%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 23/79 (29%)
KH-I_PCBP1_2_rpt3 276..351 CDD:411949 20/81 (25%)
PsiNP_995862.1 KH_1 123..184 CDD:459630 13/51 (25%)
KH-I_FUBP_rpt2 214..280 CDD:411825 21/67 (31%)
KH-I_FUBP_rpt3 317..384 CDD:411826 18/70 (26%)
KH-I_FUBP_rpt4 428..494 CDD:411827 19/68 (28%)
DUF1897 591..619 CDD:462653
DUF1897 <653..680 CDD:462653
Blue background indicates that the domain is not in the aligned region.

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