DRSC/TRiP Functional Genomics Resources

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Protein Alignment PCBP1 and Imp

DIOPT Version :10

Sequence 1:NP_006187.2 Gene:PCBP1 / 5093 HGNCID:8647 Length:356 Species:Homo sapiens
Sequence 2:NP_001245616.1 Gene:Imp / 32009 FlyBaseID:FBgn0285926 Length:638 Species:Drosophila melanogaster


Alignment Length:363 Identity:86/363 - (23%)
Similarity:157/363 - (43%) Gaps:59/363 - (16%)


- Green bases have known domain annotations that are detailed below.


Human     4 GVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI----SEGNCPERIITLTGP 64
            |:...|......:|:|:..:.||:|||::|.:::.|.::|.||:::    :.|:. |:.||:.|.
  Fly   133 GMPGPGRQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSL-EKSITIYGN 196

Human    65 TNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGA 129
            ......|...|::.::::..|:.....:.....:.|:::......|.:|||.|..||.|.:.|..
  Fly   197 PENCTNACKRILEVMQQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQDTDT 261

Human   130 QVQVA--GDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMTIPYQPMPASSPV 192
            ::.|:  .|:...:.||.||:.|:.::::....||.    ..|.||         |:        
  Fly   262 KITVSSINDINSFNLERIITVKGLIENMSRAENQIS----TKLRQS---------YE-------- 305

Human   193 ICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGF 257
                               :||:.....:....|.|.::.:.......|......|....   .|
  Fly   306 -------------------NDLQAMAPQSLMFPGLHPMAMMSTPGNGMVFNTSMPFPSCQ---SF 348

Human   258 AGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIA-----N 317
            |...:.:..|...:.:   ..|.|..|.||||.:|.|||.:|::|..|.:.|.|.:|||     .
  Fly   349 AMSKTPASVVPPVFPN---DLQETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDADK 410

Human   318 PVEGSSGRQVTITGSAASISLAQYLINARLSSEKGMGC 355
            |::..:.|:|||.|:......|||:|..:: .|:|..|
  Fly   411 PLDQQTERKVTIVGTPEGQWKAQYMIFEKM-REEGFMC 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PCBP1NP_006187.2 KH-I_PCBP1_2_rpt1 13..82 CDD:411943 19/72 (26%)
KH-I_PCBP1_2_rpt2 92..169 CDD:411946 19/78 (24%)
KH-I_PCBP1_2_rpt3 276..351 CDD:411949 29/79 (37%)
ImpNP_001245616.1 RRM2_VICKZ 42..118 CDD:409794
KH-I_IGF2BP_rpt1 144..211 CDD:411828 19/67 (28%)
KH-I_IGF2BP_rpt2 231..302 CDD:411829 20/74 (27%)
KH-I_IGF2BP_rpt3 368..437 CDD:411830 27/68 (40%)
KH-I_IGF2BP_rpt4 455..523 CDD:411831
Blue background indicates that the domain is not in the aligned region.

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