DRSC/TRiP Functional Genomics Resources

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Protein Alignment F11R and side-IV

DIOPT Version :9

Sequence 1:NP_001369656.1 Gene:F11R / 50848 HGNCID:14685 Length:327 Species:Homo sapiens
Sequence 2:NP_001034052.2 Gene:side-IV / 41657 FlyBaseID:FBgn0038156 Length:1001 Species:Drosophila melanogaster


Alignment Length:253 Identity:55/253 - (21%)
Similarity:89/253 - (35%) Gaps:79/253 - (31%)


- Green bases have known domain annotations that are detailed below.


Human    91 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV----------NIPSSATI 145
            |..:...::..||.|.|.|.|......: ..:|:.|.|:|||.:|.:          |:.|.:. 
  Fly   152 PAQLKIDNIRIEDEGVYRCRVDFRNSPT-RNLKINLTV
IVPPDRPVIYGQNRHEKAGNVESFSE- 214

Human   146 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTG-- 208
            ||..||:|....|.|....||:.|...:           :.|:...| .|:.: :.||..:.|  
  Fly   215 GNDIVLSCEVSGGRPRPNVTWYLDNTAI-----------DESFEQRP-DGKTI-NHLSYPNVGRQ 266

Human   209 ----EYSCEARNGYGTPMTSNAVRMEAVERNVGVIVAAVLVTLILLGILVFGIWFAYSRGHFDKL 269
                ...|.|.|...||..:..|.::.   |:..|...:|..                    |: 
  Fly   267 HLNSRLMCVASNTNLTPPNNRVVILDV---NLKPIAVHILTK--------------------DR- 307

Human   270 GACPSIFPSHAVFCPAD-THDPISSLSGTK--------KGTSSKKVI---YSQPSARS 315
                        |..|| |:|.....||:|        ||:...|.:   :::|..:|
  Fly   308 ------------FVSADRTYDVECKSSGSKPPALITWWKGSKQLKKLTKNFNEPDNQS 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
F11RNP_001369656.1 IgV_1_JAM1-like 30..129 CDD:409538 9/37 (24%)
Ig strand B 46..50 CDD:409538
Ig strand C 59..63 CDD:409538
Ig strand E 92..96 CDD:409538 0/3 (0%)
Ig strand F 106..111 CDD:409538 2/4 (50%)
Ig strand G 121..124 CDD:409538 0/2 (0%)
IgI_2_JAM1 135..231 CDD:409542 25/111 (23%)
Ig strand B 149..153 CDD:409542 2/3 (67%)
Ig strand C 163..167 CDD:409542 1/3 (33%)
Ig strand E 195..199 CDD:409542 1/3 (33%)
Ig strand F 209..214 CDD:409542 1/4 (25%)
Ig strand G 224..227 CDD:409542 0/2 (0%)
side-IVNP_001034052.2 V-set 79..188 CDD:284989 9/36 (25%)
IG_like 80..188 CDD:214653 9/36 (25%)
Ig 210..281 CDD:299845 20/84 (24%)
Ig 319..392 CDD:299845 8/35 (23%)
IG_like 319..383 CDD:214653 8/35 (23%)
IG_like 412..489 CDD:214653
IGc2 413..478 CDD:197706
Ig_3 509..572 CDD:290638
fn3 593..675 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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