DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAX7 and lms

DIOPT Version :10

Sequence 1:NP_002575.1 Gene:PAX7 / 5081 HGNCID:8621 Length:520 Species:Homo sapiens
Sequence 2:NP_611491.2 Gene:lms / 37322 FlyBaseID:FBgn0034520 Length:378 Species:Drosophila melanogaster


Alignment Length:409 Identity:103/409 - (25%)
Similarity:162/409 - (39%) Gaps:116/409 - (28%)


- Green bases have known domain annotations that are detailed below.


Human   114 VEKKIEEYKRENPGMFSWEIRDRLLKDGHC---DRSTVPSGLVSSISRVLRIKFGKKEEEDEADK 175
            :|:.:.:.:..:...|...::|...:.|:|   .|::.|:  .||.                .|.
  Fly    16 IEQILAKPEMRSSTSFEDSVQDESGRGGNCLGASRASSPA--TSSC----------------LDD 62

Human   176 KEDDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTH 240
            ..|||    |..|| :..|.||.|  |.|           :::|.||.|:|.|::.||..|||..
  Fly    63 NMDDG----KSDID-LASDDGNGL--GDD-----------RKKRPRTAFSAAQIKALETEFERGK 109

Human   241 YPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLP-PYQ 304
            |..:..|..||::.:|||.::::||.|||.:|:::..::.....:|.    :...|:..|. |..
  Fly   110 YLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHY----YAQLGIGGLARPMV 170

Human   305 LPDSTYPTTTISQDGGSTVHRPQPLPPSTMHQGGLAAAAAAADTSSAYGARHSFSSYSDSFMNPA 369
            :.|..:   ..||    |...|.|:....::..|.||..|:|.|::.            |.|.|.
  Fly   171 VGDRLW---LFSQ----TPTGPTPIQSIMLNGSGSAAPMASATTATG------------SPMRPY 216

Human   370 APSNHMNPVSNGLSPQVMSILGNPSAVPPQPQADFSI-----SPLHGGLDSATSISASCSQRADS 429
            |.|..|.|:.   .|.||....|......|| .:|::     .|..||:.:|:.| ..|...|.|
  Fly   217 ATSGGMPPLP---GPSVMESARNAILARGQP-LNFALPFGVAKPPAGGVPAASYI-PRCKPYATS 276

Human   430 -IKPGDSLPTSQAYCPPTYST------TGYS---------------------VDPVAG--YQYGQ 464
             :....||||:::|....|:|      :|.|                     ..||||  ..||.
  Fly   277 YVDYAASLPTNESYLQMKYATLPPEAESGASNGLAELERVFGDANANFLQQRSTPVAGTATAYGH 341

Human   465 YG-------------QSEC 470
            .|             :|||
  Fly   342 DGLNQAQRSRRPTQSESEC 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAX7NP_002575.1 paired box domain 34..164 9/52 (17%)
PAX 34..163 CDD:238076 9/51 (18%)
octapeptide 86..93
paired homeodomain 217..275 24/57 (42%)
Homeodomain 218..274 CDD:459649 24/55 (44%)
Pax7 347..385 CDD:403540 8/37 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..409 4/24 (17%)
lmsNP_611491.2 Cnd2 33..>106 CDD:450400 28/108 (26%)
Homeodomain 87..143 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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