DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAX6 and gsb

DIOPT Version :10

Sequence 1:NP_001355839.1 Gene:PAX6 / 5080 HGNCID:8620 Length:503 Species:Homo sapiens
Sequence 2:NP_523863.1 Gene:gsb / 38005 FlyBaseID:FBgn0001148 Length:427 Species:Drosophila melanogaster


Alignment Length:454 Identity:173/454 - (38%)
Similarity:232/454 - (51%) Gaps:117/454 - (25%)


- Green bases have known domain annotations that are detailed below.


Human    85 GHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRP 149
            |...||||||||:||||||:..|::|||:|.:|.|||.|||.|:||:|||||||.|:.|||||||
  Fly    19 GQGRVNQLGGVFINGRPLPNHIRRQIVEMAAAGVRPCVISRQLRVSHGCVSKILNRFQETGSIRP 83

Human   150 RAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRVLRNLASE 214
            ..|||||||||||::.|:|.:.|:..|.||:||||.:|:..|||...|.||||||:|:||     
  Fly    84 GVIGGSKPRVATPDIESRIEELKQSQPGIFSWEIRAKLIEAGVCDKQNAPSVSSISRLLR----- 143

Human   215 KQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGEDSD 279
                             |.:||         |||    .:.||..   |||  ..|:.|..|..|
  Fly   144 -----------------GSSGS---------GTS----HSIDGIL---GGG--AGSVGSEDESED 173

Human   280 EAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA 344
            :|:..:|||||.:|:||:|:.:||:|||:.|.||.||||:.||.||....|.|||:|||||||||
  Fly   174 DAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSNRRA 238

Human   345 KWRREEKLRNQRRQASNTPSHIPISSSF-STSVYQPIPQPTTPVSSFTS---------------- 392
            :.|::  |..|:     .||..|.|:|| :|......|.|...:|.::|                
  Fly   239 RLRKQ--LNTQQ-----VPSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSWPSSGAYENHAAYG 296

Human   393 GSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQ--TSSY------------SCMLPTSP 443
            ||:...:..:.|:..|:....|..|.|    .||...|:  ||:|            :..:|.:|
  Fly   297 GSVASMSPASSTSGTSSAAHSPVQTQA----QQPGTGSEFMTSTYGVGSSNATYPSAAYSMPQTP 357

Human   444 SVNGR------------------SYDTYT------PP-----------HMQTHMNSQPMGTSGT 472
            :.:..                  ::|:|.      ||           |.|....|..|.|:.|
  Fly   358 ATSAEQLRSQFASAAASGSHHPSTWDSYNFAGSFFPPASAAGNHISGYHHQVDQKSSMMTTAPT 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAX6NP_001355839.1 PAX 85..209 CDD:128645 78/123 (63%)
Homeodomain 293..348 CDD:459649 33/54 (61%)
gsbNP_523863.1 PAX 19..143 CDD:128645 78/123 (63%)
Homeodomain 186..242 CDD:459649 33/55 (60%)

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