DRSC/TRiP Functional Genomics Resources

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Protein Alignment PAX3 and Rx

DIOPT Version :10

Sequence 1:NP_852124.1 Gene:PAX3 / 5077 HGNCID:8617 Length:505 Species:Homo sapiens
Sequence 2:NP_726006.3 Gene:Rx / 37367 FlyBaseID:FBgn0020617 Length:904 Species:Drosophila melanogaster


Alignment Length:293 Identity:97/293 - (33%)
Similarity:130/293 - (44%) Gaps:69/293 - (23%)


- Green bases have known domain annotations that are detailed below.


Human   192 LSERASAPQSDE---GSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELA 253
            |::..|:.|.::   |||.:.:.|...|:|.||:|||||..||.|||||||::||||:|:|||||
  Fly   529 LNQTNSSEQGEKITSGSDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELA 593

Human   254 QRAKLTEARVQVWFSNRRARWRKQAGANQL-MAFNHL--IP-------GGFP------PTAMPTL 302
            .:..|.|.||||||.||||:||:|..:..| :...|.  :|       .|.|      |..:..|
  Fly   594 MKVNLPEVRVQVWFQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVDPWLSPPLLSAL 658

Human   303 PTYQLSETSYQPTSIPQAVSDPSSTV--------------HRPQ--PLPPSTVHQSTIPSNPDSS 351
            |.:    .|:..|..|..::.|.|..              |...  |.||...|.......|.. 
  Fly   659 PGF----LSHPQTVYPSYLTPPLSLAPGNLTMSSLAAMGHHHAHNGPPPPHVGHGGHGQPQPPP- 718

Human   352 SAYCLPSTRHGFSSYTDSFVP-PSG-----PSNPMNPTIGNGLSPQVMGLLTNHGGVPHQPQTDY 410
                 |...||        || |.|     |.:.::|.:.. :||....|     |.||...|..
  Fly   719 -----PPPPHG--------VPHPHGSHHVVPLSHLSPHLSR-MSPHATSL-----GSPHHGVTPL 764

Human   411 ALSPLTGGLEPT---TTVSASCSQRLDHMKSLD 440
            . :||...|.|:   |||:.|.||......||:
  Fly   765 G-TPLHSSLPPSSTATTVAVSSSQSSSSSASLE 796

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PAX3NP_852124.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
PAX 34..159 CDD:128645
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 37..93
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 113..161
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 165..228 15/38 (39%)
Homeodomain 220..276 CDD:459649 39/55 (71%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 309..351 11/57 (19%)
Pax7 347..391 CDD:403540 11/49 (22%)
RxNP_726006.3 Homeodomain 560..616 CDD:459649 39/55 (71%)
OAR 876..892 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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