DRSC/TRiP Functional Genomics Resources

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Protein Alignment PRKN and rnf14.2

DIOPT Version :10

Sequence 1:XP_016866397.1 Gene:PRKN / 5071 HGNCID:8607 Length:503 Species:Homo sapiens
Sequence 2:NP_001008118.1 Gene:rnf14.2 / 493480 XenbaseID:XB-GENE-22064487 Length:456 Species:Xenopus tropicalis


Alignment Length:410 Identity:97/410 - (23%)
Similarity:136/410 - (33%) Gaps:121/410 - (29%)


- Green bases have known domain annotations that are detailed below.


Human   148 SVLPGDSVGLAVILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCST------ 206
            |.||      .:||..:.....|....||       |.:.||.    :.|.:|.:.|..      
 Frog    68 SFLP------PIILDFELPPGYPSTDPPA-------FKLSCKW----LSPSQLALLCQRLDDLWV 115

Human   207 --------------CRQATLTLTQ------------GPSCWDDVLIPNRMSGECQSPHCPGTSAE 245
                          .::.||...:            ||.|     |.|.:.   .|..|..|...
 Frog   116 EYAGEVVLFAWMQFLKEGTLEYLKINSPYEIQLCEFGPKC-----IKNNLG---ISDSCSATGPA 172

Human   246 FFFKCGAHPTSDKETSVALHLIATNSRNITCI---------TCTDVRSPVLVFQCNSRHVICLD- 300
            ...........|.|:...|         |.||         .|.|.:|    :.|:    ||.. 
 Frog   173 EAVIWDTRAIQDVESVTTL---------IDCILDFNEAQQKKCFDSKS----YMCD----ICFSE 220

Human   301 -----------CFHLYCVTRLNDRQFV--HDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNR 352
                       |.|:||...|.|...|  .|.|: .:|.|.....:|:........::|||.::|
 Frog   221 KVGSECTHFKKCEHIYCNACLKDYYTVQIQDGQV-QALNCPEPKCSSVATPAQVKLLVGEELFSR 284

Human   353 YQQYGAEECVLQMGGVL-CPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GEC 415
            |.:...:..:..|..|: ||||.|...::.||......|.     .|.:|||..||.|||. ..|
 Frog   285 YDRLLLQSSLDLMADVVYCPRPNCRTPVMLEPGGEMGICS-----SCKYAFCTLCKLAYHAVAYC 344

Human   416 SAVFE-------------ASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNG 467
            :...|             |:|......|..:....:| .|..|.|.::|.:|.||.|...|||..
 Frog   345 NITSEKLLLVRDEYLEADAAGKKLLERRYGKNVIVKA-VEMRSFEWLEKNSKRCPSCRANVEKID 408

Human   468 GCMHMKCPQPQCRLEWCWNC 487
            ||..|.|  .:|...:||.|
 Frog   409 GCNRMFC--TRCNKNFCWLC 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRKNXP_016866397.1 Ubl_parkin 41..114 CDD:340496
RING0_parkin 184..267 CDD:412057 19/114 (17%)
zf-RING_14 266..354 CDD:465601 25/110 (23%)
BRcat_RBR_parkin 339..417 CDD:439001 25/79 (32%)
Rcat_RBR_parkin 447..501 CDD:439018 17/41 (41%)
rnf14.2NP_001008118.1 RWD_RNF14 9..135 CDD:467656 14/83 (17%)
RING-HC_RBR_RNF14 207..265 CDD:438290 16/66 (24%)
BRcat_RBR_RNF14 294..350 CDD:439002 20/60 (33%)
Rcat_RBR_RNF14 383..449 CDD:439015 19/46 (41%)
Blue background indicates that the domain is not in the aligned region.

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