DRSC/TRiP Functional Genomics Resources

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Protein Alignment PRKN and rnf19b

DIOPT Version :10

Sequence 1:XP_016866397.1 Gene:PRKN / 5071 HGNCID:8607 Length:503 Species:Homo sapiens
Sequence 2:XP_002940071.3 Gene:rnf19b / 100485699 XenbaseID:XB-GENE-493166 Length:691 Species:Xenopus tropicalis


Alignment Length:356 Identity:76/356 - (21%)
Similarity:105/356 - (29%) Gaps:132/356 - (37%)


- Green bases have known domain annotations that are detailed below.


Human   218 PSCWDDVL-IPNRMSGECQSPHCPGTSAE---------FFFKCGA-------------------- 252
            |:.|..:. .|:...|..:.|.|||....         |..:..|                    
 Frog    22 PTSWFGIFGFPDMTEGSAEPPPCPGARRRRLLLSLPNVFPGRTRAAPEPSVPSPPPSPPPPVSVP 86

Human   253 HPTSDKETSVALHLIATNSRNITCITCTDVRSP--VLVFQCNSRHVICLDCFHLY---------- 305
            .|.|....|.:|         |.|..|. ||.|  .|....:.||..||.|...|          
 Frog    87 PPPSSPGGSDSL---------IECPLCL-VRQPPEELPELLSCRHRSCLRCLRQYLRIEISESRV 141

Human   306 ------CVTRLND---RQFVHDPQLGYSLPCVAGCPNSLIKELHHFRILGEEQYNRYQQYGAEEC 361
                  |..||:.   |..:.||.|                            ..:|:::....|
 Frog   142 NLRCPECAERLSPQHVRAILRDPLL----------------------------TRKYEEFLLRRC 178

Human   362 VLQMGGV-LCPRPGCGAGLL-------PEPDQRKVTCEGGNGLGCGFAFCRECKEAYHEGECSAV 418
            :...... .||.|.||..::       |     |:|||..   ||...||..||..:|..:...:
 Frog   179 LAADPDCRWCPAPDCGYAVIAYGCASCP-----KLTCERE---GCQTEFCYHCKHVWHPNQTCDM 235

Human   419 FEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRL 481
            .......:...|....:......|:.|.:.:|.    ||||...:.|  :|.|.||.|  ..|..
 Frog   236 ARQQRAPSLGVRRKHPSGISYGQESGSADDMKS----CPRCSAYIIKMNDGSCNHMTC--AVCGC 294

Human   482 EWCWNC-------------GC------EWNR 493
            |:||.|             ||      .|:|
 Frog   295 EFCWLCMKEISDLHYLSPSGCTFWGKKPWSR 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRKNXP_016866397.1 Ubl_parkin 41..114 CDD:340496
RING0_parkin 184..267 CDD:412057 14/78 (18%)
zf-RING_14 266..354 CDD:465601 20/108 (19%)
BRcat_RBR_parkin 339..417 CDD:439001 19/85 (22%)
Rcat_RBR_parkin 447..501 CDD:439018 20/68 (29%)
rnf19bXP_002940071.3 RING-HC_RBR_RNF19B 98..161 CDD:438432 18/72 (25%)
BRcat-RBR_RNF19B 166..240 CDD:439024 20/109 (18%)
Rcat_RBR_RNF19 263..331 CDD:439016 20/69 (29%)
Blue background indicates that the domain is not in the aligned region.

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