DRSC/TRiP Functional Genomics Resources

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Protein Alignment PRKN and cul9

DIOPT Version :10

Sequence 1:XP_016866397.1 Gene:PRKN / 5071 HGNCID:8607 Length:503 Species:Homo sapiens
Sequence 2:NP_001120525.1 Gene:cul9 / 100145662 XenbaseID:XB-GENE-877136 Length:2492 Species:Xenopus tropicalis


Alignment Length:551 Identity:114/551 - (20%)
Similarity:181/551 - (32%) Gaps:180/551 - (32%)


- Green bases have known domain annotations that are detailed below.


Human    15 YSLKNSE--PQPESGRLYTRPEREYPITVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPAD 77
            |...|.|  .:|.:||:.    |..|...::......|..:|...:.....:.:::.:.:.:..|
 Frog  1792 YLRVNGEARSEPGAGRVL----RLLPRQTYLNVEEDEGRTLERKRNVIFCLITQIMKEEKELHID 1852

Human    78 QL--RVIFA------GKELR------NDWTVQNCDLDQQSIVHIV-------------------- 108
            .|  |||.|      |:.|:      :...|.:|      |:|::                    
 Frog  1853 NLVFRVIEACQKMESGRSLKFLSFGCSHTDVLSC------IMHLISQGYVRRSDDRPHILEYLSK 1911

Human   109 --------------QRPWRKGQEMNATGGDDPRNAAGGCEREPQSLTRVDLSSSVLPGDSVGLAV 159
                          |.|.||.|...:  ...|.:::||.|:            .||.      .|
 Frog  1912 DPATPHKGKAHISFQSPGRKRQGHGS--NQPPPSSSGGTEQ------------GVLE------TV 1956

Human   160 ILHTDSRKDSPPAGSPAGRSIYNSFYVYCKGPCQRVQPGKLRVQCSTCRQATLTLTQGPSCWDDV 224
            :|             |.||::.....        |...|::..|.|.      ||:..|.....:
 Frog  1957 LL-------------PMGRTLSQEDV--------RALMGQMVAQVSQ------TLSIDPDTAQHL 1994

Human   225 LIPNRMSGE------CQSPHCPGTSAEFFFKCGAHPTSDKETSVALHLIATNSRNITCITCTDVR 283
            ||..:.:.:      .:.|.....|:....:...||.|.:.               .|..|....
 Frog  1995 LIHCKWNVDLLLQKYTEEPELLLISSGLQVRDPQHPESPQP---------------ACPVCVSPL 2044

Human   284 SPV---LVFQCNSRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLP---CVAGCPNSLIKELHHF 342
            ||.   ....|  :|:.|..|:..|..||:.     .:..|..:.|   |:|...:..|.::   
 Frog  2045 SPAEHHPTLCC--QHLCCKSCWKEYLTTRIE-----QNLALNCTCPTTDCLAQPTSDFISKI--- 2099

Human   343 RILGEEQYNRYQQY----GAEECVLQMGGVLCPRP-GCGAGLLPEPDQRKVTCEGGNGLG----- 397
             |..:|...:|::.    ..|.|   .....|..| ||.          :|.|:.|.|.|     
 Frog  2100 -ITSKEVIEKYEKSLLRGFVENC---SNLTWCTNPQGCD----------RVLCKEGLGSGAACTK 2150

Human   398 CGFAFCRECK--EAYHEGECSAVFEASGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCH 460
            |.:..|..|.  ||::...||.:.:        :..|....|....||.||...|..:|.||.|.
 Frog  2151 CSWLSCFNCSFPEAHYPASCSHMSQ--------WMDDGGFYEGMTVEAQSKHLTKLISKHCPSCQ 2207

Human   461 VPVEKNGGCMHMKCPQPQCRLEWCWNCGCEW 491
            .|:|||.||:||.|  .:|...:||.|...|
 Frog  2208 APIEKNEGCLHMTC--AKCNHGFCWRCLKPW 2236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PRKNXP_016866397.1 Ubl_parkin 41..114 CDD:340496 16/120 (13%)
RING0_parkin 184..267 CDD:412057 14/88 (16%)
zf-RING_14 266..354 CDD:465601 18/93 (19%)
BRcat_RBR_parkin 339..417 CDD:439001 20/89 (22%)
Rcat_RBR_parkin 447..501 CDD:439018 19/45 (42%)
cul9NP_001120525.1 Cul7 362..436 CDD:463286
APC10-CUL7 1145..1275 CDD:176486
Cullin <1571..1789 CDD:459983
COG5647 <1688..1910 CDD:227934 22/127 (17%)
RING-HC_RBR_CUL9 2035..2087 CDD:438286 13/73 (18%)
BRcat_RBR_CUL9 2113..2186 CDD:439008 20/93 (22%)
Rcat_RBR_CUL9 2194..2251 CDD:439020 19/45 (42%)
Blue background indicates that the domain is not in the aligned region.

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