DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sem1 and SEM1

DIOPT Version :9

Sequence 1:NP_652555.1 Gene:Sem1 / 50428 FlyBaseID:FBgn0266666 Length:79 Species:Drosophila melanogaster
Sequence 2:NP_010651.3 Gene:SEM1 / 851967 SGDID:S000007235 Length:89 Species:Saccharomyces cerevisiae


Alignment Length:75 Identity:34/75 - (45%)
Similarity:48/75 - (64%) Gaps:10/75 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 EKEKEETNNKSEDLGLLEEDDEFEEFPAEDFRVGDDEE-----ELNVWEDNWDDDNVEDDFSQQL 68
            :|:.||.|.||     ||||||||:||.:.:..|:..:     :.|:||:||||..|:|||:.:|
Yeast    18 KKKNEEINKKS-----LEEDDEFEDFPIDTWANGETIKSNAVTQTNIWEENWDDVEVDDDFTNEL 77

  Fly    69 KAHLESKKME 78
            ||.|:..|.|
Yeast    78 KAELDRYKRE 87

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sem1NP_652555.1 DSS1_SEM1 <43..73 CDD:398704 14/34 (41%)
SEM1NP_010651.3 DSS1_Sem1 28..84 CDD:259841 27/60 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4764
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006435
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_106980
Panther 1 1.100 - - LDO PTHR16771
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4102
TreeFam 00.000 Not matched by this tool.
65.810

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