Protein Alignment PABPC3 and Pabpc1

DIOPT Version :9

• Sequence 1: NP_112241.2
• Gene: PABPC3 / 5042
• HGNCID: 8556
• Length: 631
• Species: Homo sapiens
• Sequence 2: NP_032800.2
• Gene: Pabpc1 / 18458
• MGIID: 1349722
• Length: 636
• Species: Mus musculus
• Alignment Length: 637
• Identity: 584/637 - (91%)
• Similarity: 600/637 - (94%)
• Gaps: 7/637 - (1%)

Human     1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDA 65
            ||||.||||.|||||||||||||||||||||||||||||||:|||:||..|..|||||||...||
Mouse     1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65

Human    66 EHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
            |.|||||||||||||||||||||||||||||||||||:|||||||:|||||||.|||||||||.|
Mouse    66 ERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Human   131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYI 195
            |||||||||||||||||.|||||||:||||||||.||||||:||||||||||||||||||.||||
Mouse   131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYI 195

Human   196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260
            |||||||||||||:|||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse   196 KNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ 260

Human   261 IYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKV 325
            ||||||||||||||||||.|||||||||||||.|||||||||||||||||||.||||||||||||
Mouse   261 IYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325

Human   326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVR 390
            |||||||||||||||||||||||||||||||||||||||||||||||||||:|||:|||||||||
Mouse   326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390

Human   391 AVPN------QRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIR 449
            ||||      |.||||||||.|:|||||.||||||||||:|||||||||||||||||||.|.|||
Mouse   391 AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIR 455

Human   450 PGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRN 514
            |.|||.||||||||||||||||||||||||||||:|||| |||||||||||||||:|||||||||
Mouse   456 PAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRP-AAAAAAATPAVRTVPQYKYAAGVRN 519

Human   515 PQQHRNAQPQVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGM 579
            ||||.||||||||||.||||||||.||||.|||||||:||||||||||||||||||:||||||||
Mouse   520 PQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGM 584

Human   580 LLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVNSATGVPTV 631
            ||||||||||:|||||||||||||||||||||||||||.|||||||||||||
Mouse   585 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV 636

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PABPC3	NP_112241.2	PABP-1234	11..610	CDD:130689	554/604 (92%)
Pabpc1	NP_032800.2	PABP-1234	11..615	CDD:130689	554/604 (92%)
		CSDE1-binding. /evidence=ECO:0000250	166..289		118/122 (97%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	141	1.000	Domainoid score	I35795
eggNOG	1	0.900	-	-		E1_KOG0123
HGNC	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	1	0.950	-	0	Normalized mean entropy	S581
NCBI	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG53624
OrthoDB	1	1.010	-	-		D1027234at2759
OrthoFinder	1	1.000	-	-		FOG0000294
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100425
Panther	1	1.100	-	-	O	PTHR24012
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X269
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	12	11.740