DRSC/TRiP Functional Genomics Resources

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Protein Alignment schlank and LOH2

DIOPT Version :10

Sequence 1:NP_652526.1 Gene:schlank / 50392 FlyBaseID:FBgn0040918 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_188557.1 Gene:LOH2 / 821460 AraportID:AT3G19260 Length:296 Species:Arabidopsis thaliana


Alignment Length:228 Identity:85/228 - (37%)
Similarity:141/228 - (61%) Gaps:9/228 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 LVKFCENTWRCIYYLYSFIFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFY-WSL 196
            :||..|:.|:.:||.....|.:.|::.:||..|:|..::|:|:|.:...|..|||....|| :.:
plant    70 IVKCKESLWKLLYYAACDFFVLQVIYHEPWARDIKLYFHGWPNQELKLSIKLYYMCQCGFYVYGV 134

  Fly   197 TGTQFFDVKRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYAKYQ 261
            .....::.:||||..|..||::|::|:|.|::.:..|:|:::|.:||.:|:|:|.||:.||::.:
plant   135 AALLAWETRRKDFAVMMSHHVITIILLSYSYLTSFFRIGAIILALHDASDVFMETAKIFKYSEKE 199

  Fly   262 KLCDAIFAIFTVVWIVTRLGFYP-RIIYSSSVEAPRILPMFPA-----YYIFNSLLLMLLVLHVI 320
            ......||:|.|.|::.||.::| .||.::|:|....|.|..|     ||.||::||||||.|:.
plant   200 FGASVCFALFAVSWLLLRLIYFPFWIIRATSIELLDYLDMTSAEGTLMYYSFNTMLLMLLVFHIY 264

  Fly   321 WTYMILKIVVDSLQ-KGLMSGDIRSSDSEDLTD 352
            |.|:|..::|..|: :|.:..||| |||||..|
plant   265 WWYLICAMIVRLLKNRGKVGEDIR-SDSEDDDD 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
schlankNP_652526.1 homeodomain 75..131 CDD:238039
TLC 135..334 CDD:214789 73/205 (36%)
LOH2NP_188557.1 TRAM_LAG1_CLN8 72..270 CDD:461055 71/197 (36%)
Blue background indicates that the domain is not in the aligned region.

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