DRSC/TRiP Functional Genomics Resources

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Protein Alignment schlank and Cers5

DIOPT Version :10

Sequence 1:NP_652526.1 Gene:schlank / 50392 FlyBaseID:FBgn0040918 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001102463.1 Gene:Cers5 / 366984 RGDID:1311597 Length:449 Species:Rattus norvegicus


Alignment Length:425 Identity:155/425 - (36%)
Similarity:234/425 - (55%) Gaps:55/425 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 WSTHIWLPPNTTWADI-APGSRPDVVHANYKDLIWPIPFAAVVMLVRYTLERFWISPVGKSLGIR 75
            ||...|||.|.:|||: .||.......|.:  ::...|.||.:..||...|||...|....:||.
  Rat    17 WSGRFWLPQNVSWADLEGPGDGYGYPRARH--VLSVFPLAAGLFSVRMLFERFIAKPCALRIGIE 79

  Fly    76 SSRPKKAANVPILEKTYAKSTRL-DKKKLVPLSKQTDMSEREIERWWRLRRAQDKPSTLVKFCEN 139
            .|...:..:...|||.:...::. |:|:|..||||.|...|:|:.|:|.||.||||.||.||||:
  Rat    80 DSAVYQVESNVTLEKVFTSISKYPDEKRLKGLSKQLDWDVRKIQCWFRHRRNQDKPPTLTKFCES 144

  Fly   140 TWRCIYYLYSFIFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQFFDV 204
            .||..:|...|.:||..||..||.||.:.|||.||:|.:|.::::||:..::|||||..:||.||
  Rat   145 MWRFTFYFCIFCYGVRFLWSMPWLWDTRQCWYNYPYQPLSRELYYYYLTQLAFYWSLVFSQFIDV 209

  Fly   205 KRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYAKYQKLCDAIFA 269
            |||||..||:||::.:.|:|.|::.|:.|||:::|.:||.||..||||||..||:.::||:.:|.
  Rat   210 KRKDFLMMFMHHLIAVTLISFSYINNMVRVGAIILCLHDSADSLLEAAKLANYARQERLCNTLFV 274

  Fly   270 IFTVVWIVTRLGFYPRIIYSSSV-EAPRILPMFPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSL 333
            ||...::|||||.:|..|.:::: |:..|:..||::::||.|||:|.:|||||:|:|.:....:|
  Rat   275 IFGAAFMVTRLGIFPLWILNTTLFESWEIIGPFPSWWLFNGLLLILQMLHVIWSYLIARTAFKAL 339

  Fly   334 QKGLMS----------------------------------------GDIRSSDSEDLTDSSGNAR 358
            .:|.::                                        .|:.||..||.|..:.|  
  Rat   340 VRGKVTYPGGISPGSVPSALFSPPSSFLCLVAAGQSHPLHVSKDDRSDVESSSEEDETTHTNN-- 402

  Fly   359 LTNGSARSKNKSI-------SSAPSDKGSAGGAGS 386
             .:||:.|...:.       |....::|:...||:
  Rat   403 -LSGSSSSNGANCMNGRMGGSHLAEEQGTCKAAGN 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
schlankNP_652526.1 homeodomain 75..131 CDD:238039 21/56 (38%)
TLC 135..334 CDD:214789 92/199 (46%)
Cers5NP_001102463.1 homeodomain <91..136 CDD:238039 20/44 (45%)
TLC 139..339 CDD:214789 92/199 (46%)

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