DRSC/TRiP Functional Genomics Resources

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Protein Alignment schlank and Cers6

DIOPT Version :10

Sequence 1:NP_652526.1 Gene:schlank / 50392 FlyBaseID:FBgn0040918 Length:400 Species:Drosophila melanogaster
Sequence 2:NP_001386291.1 Gene:Cers6 / 366065 RGDID:1561599 Length:392 Species:Rattus norvegicus


Alignment Length:382 Identity:156/382 - (40%)
Similarity:236/382 - (61%) Gaps:15/382 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FWSTHIWLPPNTTWADIAPGSRPDVVHANYKDLIWPIPFAAVVMLVRYTLERFWISPVGKSLGIR 75
            ||:...|||.|.||||:.  :..:......:||....|.|..:.:||...|||...|...:|.|:
  Rat     8 FWNERFWLPHNVTWADLK--NTEEATFPQAEDLYLAFPLAFCIFMVRLIFERFIAKPCAVALNIQ 70

  Fly    76 SSRPKKAANVPILEKTYAKSTR-LDKKKLVPLSKQTDMSEREIERWWRLRRAQDKPSTLVKFCEN 139
            ::.|:.|....||||.:...|: .|:|:|..||||.|...|.|:||:|.||.|:|||||.:|||:
  Rat    71 ANGPQIAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSTLTRFCES 135

  Fly   140 TWRCIYYLYSFIFGVIVLWDKPWFWDVKSCWYGYPHQSISNDIWWYYMISMSFYWSLTGTQFFDV 204
            .||..:|||.|.:||..|...||.|:.:.|||.||:|.::.|:.:||::.:||||||..:||.|:
  Rat   136 MWRFSFYLYVFSYGVRFLKQTPWLWNTRHCWYNYPYQPLTADLHYYYILELSFYWSLMVSQFTDI 200

  Fly   205 KRKDFWQMFIHHMVTLLLMSLSWVCNLHRVGSLVLVVHDCADIFLEAAKLTKYAKYQKLCDAIFA 269
            |||||..||:||:.|:.|::.|:|.|:.|||:|||.:||.||..|||||:..|||:||:||.:|.
  Rat   201 KRKDFGIMFLHHLATIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFV 265

  Fly   270 IFTVVWIVTRLGFYPRIIYSSSV-EAPRILPMFPAYYIFNSLLLMLLVLHVIWTYMILKIVVDSL 333
            :|.||:|.||||.:|..:.:::: |:..|:..:|::::||.|||:|..|:..|:|:|:||...::
  Rat   266 MFAVVFITTRLGIFPLWVLNTTLFESWEIVGPYPSWWVFNLLLLLLQGLNCFWSYLIVKIACKTV 330

  Fly   334 QKGLMSG-----DIRSSDSEDLTDSSGNARLTNGSARSKNKSISSAPSDKGSAGGAG 385
            .|| .:|     .:...|..|:..||.:.     .:....|.:.|:.:..|::|..|
  Rat   331 SKG-KAGKWNPVHVSKDDRSDIESSSDDE-----DSEPPGKKLHSSTTTNGTSGTNG 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
schlankNP_652526.1 homeodomain 75..131 CDD:238039 24/56 (43%)
TLC 135..334 CDD:214789 94/199 (47%)
Cers6NP_001386291.1 homeodomain 80..127 CDD:238039 22/46 (48%)
TRAM_LAG1_CLN8 131..324 CDD:461055 92/192 (48%)

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